HL_3JBN_020

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUUUGUUCUUA

Length

12 nucleotides

Bulged bases

3JBN|1|A|G|897, 3JBN|1|A|U|908

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_020 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.2267

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

3JBN|1|A|U|892
3JBN|1|A|U|893
3JBN|1|A|U|894
3JBN|1|A|U|895
3JBN|1|A|U|896
3JBN|1|A|G|897
3JBN|1|A|U|905
3JBN|1|A|U|906
3JBN|1|A|C|907
3JBN|1|A|U|908
3JBN|1|A|U|909
3JBN|1|A|A|910

Current chains

Chain A

18S ribosomal RNA

Nearby chains