HL_3JBN_024

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_024 not in the Motif Atlas

Geometric match to HL_6JQ5_004

Geometric discrepancy: 0.1517

The information below is about HL_6JQ5_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3JBN|1|A|A|1185
3JBN|1|A|G|1186
3JBN|1|A|A|1187
3JBN|1|A|A|1188
3JBN|1|A|A|1189
3JBN|1|A|U|1190

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein eS26

Chain G

40S ribosomal protein uS5

Chain K

40S ribosomal protein uS8