HL_3JBN_026

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

3JBN|1|A|A|1297

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_026 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.1865

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

3JBN|1|A|G|1289
3JBN|1|A|A|1290
3JBN|1|A|C|1291
3JBN|1|A|U|1292
3JBN|1|A|C|1293
3JBN|1|A|A|1294
3JBN|1|A|A|1295
3JBN|1|A|C|1296
3JBN|1|A|A|1297
3JBN|1|A|C|1298

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain M

40S ribosomal protein uS9

Chain N

40S ribosomal protein uS10