HL_3JBN_027

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAUUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_027 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.3882

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3JBN|1|A|C|1321
3JBN|1|A|A|1322
3JBN|1|A|U|1362
3JBN|1|A|U|1363
3JBN|1|A|G|1364

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein eS10

Chain R

40S ribosomal protein eS12