HL_3JBN_030

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CACUG

Length

5 nucleotides

Bulged bases

3JBN|1|A|U|1464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_030 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2233

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3JBN|1|A|C|1461
3JBN|1|A|A|1462
3JBN|1|A|C|1463
3JBN|1|A|U|1464
3JBN|1|A|G|1602

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein uS9

Chain Y

40S ribosomal protein eS19