HL_3JBN_031

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGUCUAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_031 not in the Motif Atlas

Geometric match to HL_5J7L_026

Geometric discrepancy: 0.2879

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3JBN|1|A|U|1642
3JBN|1|A|G|1643
3JBN|1|A|U|1644
3JBN|1|A|C|1645
3JBN|1|A|U|1646
3JBN|1|A|A|1647
3JBN|1|A|A|1648

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein eS17