HL_3JBN_052

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUUUUUCU

Length

8 nucleotides

Bulged bases

3JBN|1|AA|U|668, 3JBN|1|AA|C|669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_052 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2722

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3JBN|1|AA|A|663
3JBN|1|AA|U|664
3JBN|1|AA|U|665
3JBN|1|AA|U|666
3JBN|1|AA|U|667
3JBN|1|AA|U|668
3JBN|1|AA|C|669
3JBN|1|AA|U|670

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein uL4

Chain AI

60S ribosomal protein eL6