HL_3JBN_056

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCCCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_056 not in the Motif Atlas

Geometric match to HL_1GID_008

Geometric discrepancy: 0.3794

The information below is about HL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50621.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

3JBN|1|AA|G|835
3JBN|1|AA|C|856
3JBN|1|AA|C|857
3JBN|1|AA|C|858
3JBN|1|AA|C|859

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein uL30

Chain AF

60S ribosomal protein uL4

Chain AS

60S ribosomal protein eL18