HL_3JBN_068

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_068 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1589

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

3JBN|1|AA|A|1611
3JBN|1|AA|U|1612
3JBN|1|AA|G|1613
3JBN|1|AA|A|1614
3JBN|1|AA|G|1615
3JBN|1|AA|A|1616
3JBN|1|AA|A|1617
3JBN|1|AA|C|1618
3JBN|1|AA|U|1619

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein eL31

Chain AT

60S ribosomal protein eL19

Chain AW

60S ribosomal protein uL22