HL_3JBN_074

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUUUCUUU

Length

9 nucleotides

Bulged bases

3JBN|1|AA|U|1842

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_074 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.207

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3JBN|1|AA|G|1835
3JBN|1|AA|U|1836
3JBN|1|AA|U|1837
3JBN|1|AA|U|1838
3JBN|1|AA|U|1839
3JBN|1|AA|C|1840
3JBN|1|AA|U|1841
3JBN|1|AA|U|1842
3JBN|1|AA|U|1843

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain AX

60S ribosomal protein eL22