HL_3JBN_095

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_095 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1609

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

3JBN|1|AA|U|3032
3JBN|1|AA|A|3033
3JBN|1|AA|A|3034
3JBN|1|AA|A|3035
3JBN|1|AA|A|3036
3JBN|1|AA|G|3037
3JBN|1|AA|G|3038
3JBN|1|AA|G|3039

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain AQ

60S ribosomal protein uL16

Chain AV

60S ribosomal protein eL21