HL_3JBN_098

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AAUUACU

Length

7 nucleotides

Bulged bases

3JBN|1|AA|U|3130, 3JBN|1|AA|C|3132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_098 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2603

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

3JBN|1|AA|A|3127
3JBN|1|AA|A|3128
3JBN|1|AA|U|3129
3JBN|1|AA|U|3130
3JBN|1|AA|A|3131
3JBN|1|AA|C|3132
3JBN|1|AA|U|3133

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein eL13

Chain Ab

60S ribosomal protein eL36