HL_3JBN_107

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

3JBN|1|AA|U|3698

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_107 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1386

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

3JBN|1|AA|G|3697
3JBN|1|AA|U|3698
3JBN|1|AA|A|3699
3JBN|1|AA|G|3700
3JBN|1|AA|A|3701
3JBN|1|AA|C|3702
3JBN|1|AA|G|3703
3JBN|1|AA|A|3704
3JBN|1|AA|C|3705

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AW

60S ribosomal protein uL22