HL_3JBO_013

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUAAGG

Length

6 nucleotides

Bulged bases

3JBO|1|A|A|422

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_013 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.2831

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3JBO|1|A|C|420
3JBO|1|A|U|421
3JBO|1|A|A|422
3JBO|1|A|A|423
3JBO|1|A|G|424
3JBO|1|A|G|425

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein uL14

Chain H

40S ribosomal protein eS6