3JBO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JBO_001 | 1/7/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_3JBO_002 | 1/7/31:39 | tRNA anticodon loop | homologous HL_5UD5_002 HL_77082.1 | |
| HL_3JBO_003 | 1/7/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5B63_004 HL_28252.9 | |
| HL_3JBO_004 | 1/A/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_3JBO_005 | 1/A/73:79 | No text annotation | ||
| HL_3JBO_006 | 1/A/152:158 | GNRA | geometric HL_5TBW_047 NA | |
| HL_3JBO_007 | 1/A/184:201 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_3JBO_008 | 1/A/245:252 | T-loop with 2 stacked bulged bases | geometric HL_5DH6_002 HL_01609.3 | |
| HL_3JBO_009 | 1/A/270:292 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_3JBO_010 | 1/A/336:344 | GNRA related | geometric HL_4V88_193 NA | |
| HL_3JBO_011 | 1/A/374:379 | No text annotation | geometric HL_4V88_194 NA | |
| HL_3JBO_012 | 1/A/399:410 | No text annotation | geometric HL_4V88_195 NA | |
| HL_3JBO_013 | 1/A/420:425 | UNCG | geometric HL_5J7L_030 HL_34617.5 | |
| HL_3JBO_014 | 1/A/456:462 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_3JBO_015 | 1/A/492:508 | No text annotation | ||
| HL_3JBO_016 | 1/A/528:538 | No text annotation | geometric HL_4TUE_219 HL_75293.5 | |
| HL_3JBO_017 | 1/A/576:581 | GNRA variation | geometric HL_4V88_200 NA | |
| HL_3JBO_018 | 1/A/653:747 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_3JBO_019 | 1/A/814:822 | No text annotation | geometric HL_4V88_203 NA | |
| HL_3JBO_020 | 1/A/837:843 | No text annotation | geometric HL_4KR9_003 HL_70782.2 | |
| HL_3JBO_021 | 1/A/892:910 | No text annotation | ||
| HL_3JBO_022 | 1/A/969:978 | No text annotation | geometric HL_4LFB_015 HL_75293.5 | |
| HL_3JBO_023 | 1/A/1006:1011 | GNRA | geometric HL_4V88_207 NA | |
| HL_3JBO_024 | 1/A/1066:1076 | No text annotation | geometric HL_5J7L_017 HL_75293.5 | |
| HL_3JBO_025 | 1/A/1185:1190 | GNRA | geometric HL_4V88_210 NA | |
| HL_3JBO_026 | 1/A/1222:1227 | GNRA | geometric HL_4V9F_048 HL_37824.8 | |
| HL_3JBO_027 | 1/A/1289:1298 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_3JBO_028 | 1/A/1322:1363 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_3JBO_029 | 1/A/1397:1403 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_3JBO_030 | 1/A/1411:1418 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_3JBO_031 | 1/A/1461:1602 | No text annotation | ||
| HL_3JBO_032 | 1/A/1642:1648 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_3JBO_033 | 1/A/1749:1780 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_3JBO_034 | 1/A/1797:1802 | GNRA | geometric HL_4V88_218 NA | |
| HL_3JBO_035 | 1/A/1847:1858 | No text annotation | geometric HL_4V88_219 NA | |
| HL_3JBO_036 | 1/A/1891:1899 | No text annotation | geometric HL_4V88_220 NA | |
| HL_3JBO_037 | 1/A/1985:2004 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_3JBO_038 | 1/A/2070:2075 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_3JBO_039 | 1/AA/38:45 | No text annotation | geometric HL_4V9F_006 HL_30068.2 | |
| HL_3JBO_040 | 1/AA/69:74 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_3JBO_041 | 1/AA/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_3JBO_042 | 1/AA/135:142 | No text annotation | ||
| HL_3JBO_043 | 1/AA/202:209 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_3JBO_044 | 1/AA/216:220 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_3JBO_045 | 1/AA/224:232 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_3JBO_046 | 1/AA/285:294 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_3JBO_047 | 1/AA/311:320 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_3JBO_048 | 1/AA/365:370 | GNRA | homologous HL_5TBW_010 NA | |
| HL_3JBO_049 | 1/AA/391:396 | GNRA | homologous HL_5TBW_011 NA | |
| HL_3JBO_050 | 1/AA/552:576 | No text annotation | ||
| HL_3JBO_111 | 1/AA/591:600 | No text annotation | ||
| HL_3JBO_051 | 1/AA/594:599 | No text annotation | ||
| HL_3JBO_052 | 1/AA/663:670 | Other HL | geometric HL_5J7L_200 HL_08100.1 | |
| HL_3JBO_053 | 1/AA/718:727 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_3JBO_054 | 1/AA/764:775 | No text annotation | homologous HL_5TBW_015 NA | |
| HL_3JBO_055 | 1/AA/801:806 | GNRA | homologous HL_5TBW_016 NA | |
| HL_3JBO_056 | 1/AA/835:859 | No text annotation | ||
| HL_3JBO_057 | 1/AA/883:890 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_3JBO_058 | 1/AA/963:968 | GNRA | homologous HL_8C3A_019 NA | |
| HL_3JBO_059 | 1/AA/995:1004 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_3JBO_060 | 1/AA/1029:1037 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_3JBO_061 | 1/AA/1077:1082 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_3JBO_062 | 1/AA/1200:1208 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_3JBO_063 | 1/AA/1254:1260 | GNRA | homologous HL_8C3A_025 NA | |
| HL_3JBO_064 | 1/AA/1276:1283 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_3JBO_065 | 1/AA/1486:1494 | No text annotation | ||
| HL_3JBO_066 | 1/AA/1551:1556 | GNRA | homologous HL_8C3A_030 NA | |
| HL_3JBO_067 | 1/AA/1611:1619 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_3JBO_068 | 1/AA/1654:1662 | No text annotation | geometric HL_7A0S_041 NA | |
| HL_3JBO_069 | 1/AA/1693:1698 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_3JBO_070 | 1/AA/1713:1720 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_3JBO_071 | 1/AA/1742:1751 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_3JBO_072 | 1/AA/1783:1788 | GNRA | geometric HL_5TBW_036 NA | |
| HL_3JBO_073 | 1/AA/1835:1843 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_3JBO_074 | 1/AA/1876:1882 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_3JBO_075 | 1/AA/1912:1957 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_3JBO_076 | 1/AA/1978:1990 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3JBO_077 | 1/AA/2014:2018 | Mini UNCG | homologous HL_8P9A_151 HL_48778.2 | |
| HL_3JBO_078 | 1/AA/2111:2118 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_3JBO_079 | 1/AA/2129:2135 | GNRA | homologous HL_8C3A_042 NA | |
| HL_3JBO_080 | 1/AA/2191:2196 | UNCG | homologous HL_8C3A_043 NA | |
| HL_3JBO_081 | 1/AA/2220:2387 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_3JBO_082 | 1/AA/2403:2407 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_3JBO_083 | 1/AA/2428:2438 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_3JBO_084 | 1/AA/2458:2463 | GNRA | homologous HL_8C3A_047 NA | |
| HL_3JBO_085 | 1/AA/2512:2519 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
| HL_3JBO_086 | 1/AA/2546:2556 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_3JBO_087 | 1/AA/2585:2593 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_3JBO_088 | 1/AA/2662:2671 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_3JBO_112 | 1/AA/2829:2926 | No text annotation | ||
| HL_3JBO_089 | 1/AA/2836:2917 | No text annotation | geometric HL_8C3A_012 NA | |
| HL_3JBO_090 | 1/AA/2955:2963 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_3JBO_091 | 1/AA/2972:2984 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_3JBO_092 | 1/AA/3012:3020 | No text annotation | ||
| HL_3JBO_093 | 1/AA/3032:3039 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_3JBO_094 | 1/AA/3063:3071 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_3JBO_095 | 1/AA/3083:3088 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_3JBO_096 | 1/AA/3127:3133 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_3JBO_097 | 1/AA/3199:3207 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_3JBO_098 | 1/AA/3256:3263 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_3JBO_099 | 1/AA/3279:3285 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_3JBO_100 | 1/AA/3322:3327 | GNRA | homologous HL_8C3A_065 NA | |
| HL_3JBO_101 | 1/AA/3411:3416 | GNRA | homologous HL_8C3A_066 NA | |
| HL_3JBO_102 | 1/AA/3453:3458 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_3JBO_103 | 1/AA/3494:3509 | No text annotation | ||
| HL_3JBO_113 | 1/AA/3637:3648 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_3JBO_104 | 1/AA/3697:3705 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_3JBO_105 | 1/AA/3740:3749 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_3JBO_114 | 1/AB/32:45 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_3JBO_106 | 1/AB/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_3JBO_107 | 1/AB/86:91 | GNRA | geometric HL_5M0J_002 HL_37824.8 | |
| HL_3JBO_115 | 1/AC/51:60 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_3JBO_108 | 1/AC/77:82 | No text annotation | geometric HL_4V88_194 NA | |
| HL_3JBO_109 | 1/AC/111:117 | No text annotation | geometric HL_5TBW_075 NA | |
| HL_3JBO_110 | 1/AC/128:133 | No text annotation | geometric HL_4V9F_003 HL_75660.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JBO_001 | 1/A/24:26, 1/A/607:608 | Single bulged C | geometric IL_7KGA_004 IL_61258.15 | |
| IL_3JBO_002 | 1/A/37:41, 1/A/472:477 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_3JBO_003 | 1/A/42:48, 1/A/437:439 | No text annotation | geometric IL_4V88_387 NA | |
| IL_3JBO_004 | 1/A/50:52, 1/A/434:435 | Minor groove platform | geometric IL_5J7L_004 IL_51454.3 | |
| IL_3JBO_005 | 1/A/58:63, 1/A/89:91 | No text annotation | ||
| IL_3JBO_006 | 1/A/64:68, 1/A/84:88 | No text annotation | homologous IL_8P9A_379 IL_21667.1 | |
| IL_3JBO_007 | 1/A/111:114, 1/A/308:311 | Tandem non-canonical cWW pairs | geometric IL_4V88_391 NA | |
| IL_3JBO_008 | 1/A/115:118, 1/A/306:307 | Major groove intercalation | geometric IL_5J7L_315 IL_82107.5 | |
| IL_3JBO_009 | 1/A/119:123, 1/A/302:305 | UAA/GAN variation | geometric IL_3LOA_001 IL_64231.5 | |
| IL_3JBO_010 | 1/A/141:147, 1/A/163:170 | tWH-tWH-tHW-tHW | geometric IL_4V88_394 NA | |
| IL_3JBO_011 | 1/A/216:245, 1/A/252:254 | No text annotation | ||
| IL_3JBO_012 | 1/A/266:268, 1/A/294:295 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_3JBO_013 | 1/A/317:322, 1/A/354:361 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_3JBO_014 | 1/A/324:329, 1/A/351:352 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_3JBO_015 | 1/A/369:371, 1/A/382:387 | No text annotation | geometric IL_4V88_404 NA | |
| IL_3JBO_016 | 1/A/395:397, 1/A/412:414 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_3JBO_017 | 1/A/417:419, 1/A/426:428 | Isolated near basepair | geometric IL_3NJ7_004 IL_42997.3 | |
| IL_3JBO_018 | 1/A/445:447, 1/A/469:470 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_3JBO_238 | 1/A/449:453, 1/A/466:467 | No text annotation | homologous IL_8P9A_397 IL_03109.3 | |
| IL_3JBO_239 | 1/A/453:454, 1/A/464:466 | Single bulged G | homologous IL_8P9A_398 IL_00225.14 | |
| IL_3JBO_240 | 1/A/521:523, 1/A/543:550 | No text annotation | homologous IL_8CRE_418 IL_86136.1 | |
| IL_3JBO_021 | 1/A/557:564, 1/A/594:595 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_3JBO_022 | 1/A/564:566, 1/A/593:594 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_3JBO_023 | 1/A/569:575, 1/A/582:590 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_3JBO_024 | 1/A/623:629, 1/A/1205:1206 | No text annotation | geometric IL_4V88_416 NA | |
| IL_3JBO_025 | 1/A/631:633, 1/A/1042:1044 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
| IL_3JBO_026 | 1/A/634:638, 1/A/1037:1041 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_3JBO_027 | 1/A/651:653, 1/A/747:749 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
| IL_3JBO_028 | 1/A/757:760, 1/A/787:790 | Tandem non-canonical cWW pairs | geometric IL_4WF9_110 IL_51479.1 | |
| IL_3JBO_029 | 1/A/796:797, 1/A/865:868 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_3JBO_030 | 1/A/798:800, 1/A/862:864 | Isolated non-canonical cWW pair | geometric IL_4V88_424 NA | |
| IL_3JBO_031 | 1/A/801:809, 1/A/854:861 | No text annotation | homologous IL_8P9A_414 IL_59049.1 | |
| IL_3JBO_032 | 1/A/827:835, 1/A/845:846 | No text annotation | ||
| IL_3JBO_033 | 1/A/878:879, 1/A/923:925 | Single bulged A | geometric IL_8C3A_019 NA | |
| IL_3JBO_034 | 1/A/881:883, 1/A/919:921 | Isolated non-canonical cWW pair | geometric IL_5TBW_008 NA | |
| IL_3JBO_035 | 1/A/883:886, 1/A/916:919 | Tandem non-canonical cWW pairs | geometric IL_402D_001 IL_77658.1 | |
| IL_3JBO_036 | 1/A/886:888, 1/A/914:916 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 IL_44465.1 | |
| IL_3JBO_037 | 1/A/890:892, 1/A/910:912 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_3JBO_038 | 1/A/933:934, 1/A/1031:1034 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_3JBO_039 | 1/A/936:937, 1/A/1027:1029 | Single bulged U | geometric IL_7KVT_002 IL_89505.4 | |
| IL_3JBO_040 | 1/A/939:942, 1/A/1023:1025 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_87907.2 | |
| IL_3JBO_041 | 1/A/943:946, 1/A/1020:1022 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 IL_57744.1 | |
| IL_3JBO_042 | 1/A/955:957, 1/A/993:995 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
| IL_3JBO_043 | 1/A/962:968, 1/A/979:988 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_3JBO_044 | 1/A/1054:1058, 1/A/1084:1085 | Left turn | geometric IL_4LFB_032 IL_29346.2 | |
| IL_3JBO_045 | 1/A/1059:1063, 1/A/1079:1083 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_3JBO_046 | 1/A/1103:1105, 1/A/1196:1202 | No text annotation | geometric IL_4V88_437 NA | |
| IL_3JBO_047 | 1/A/1117:1119, 1/A/1169:1171 | Isolated non-canonical cWW pair | geometric IL_4ZC7_001 IL_87907.2 | |
| IL_3JBO_048 | 1/A/1212:1219, 1/A/1230:1235 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4LFB_034 IL_41756.4 | |
| IL_3JBO_049 | 1/A/1247:1248, 1/A/1927:1929 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_3JBO_050 | 1/A/1250:1252, 1/A/1924:1925 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_3JBO_051 | 1/A/1258:1261, 1/A/1914:1918 | C-loop | geometric IL_4V88_443 NA | |
| IL_3JBO_052 | 1/A/1274:1276, 1/A/1710:1712 | Isolated non-canonical cWW pair | geometric IL_4NGF_002 IL_87907.2 | |
| IL_3JBO_053 | 1/A/1279:1280, 1/A/1705:1707 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_3JBO_054 | 1/A/1369:1371, 1/A/1686:1687 | Single bulged U | geometric IL_5J7L_046 IL_89505.4 | |
| IL_3JBO_055 | 1/A/1373:1377, 1/A/1682:1684 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_3JBO_224 | 1/A/1373:1379, 1/A/1676:1684 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_3JBO_056 | 1/A/1377:1379, 1/A/1676:1682 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_3JBO_057 | 1/A/1381:1382, 1/A/1672:1674 | Single bulged A | geometric IL_4V88_452 NA | |
| IL_3JBO_058 | 1/A/1408:1410, 1/A/1419:1420 | Minor groove platform | geometric IL_5ML7_009 IL_51454.3 | |
| IL_3JBO_059 | 1/A/1442:1445, 1/A/1628:1630 | Isolated non-canonical cWW pair | geometric IL_1XJR_003 IL_87907.2 | |
| IL_3JBO_060 | 1/A/1447:1450, 1/A/1623:1626 | Minor groove platform | geometric IL_4V88_456 NA | |
| IL_3JBO_061 | 1/A/1635:1637, 1/A/1653:1658 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_3JBO_241 | 1/A/1725:1732, 1/A/1816:1825 | No text annotation | ||
| IL_3JBO_062 | 1/A/1791:1794, 1/A/1805:1808 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_3JBO_063 | 1/A/1837:1842, 1/A/1863:1868 | No text annotation | geometric IL_4V88_462 NA | |
| IL_3JBO_064 | 1/A/1933:1935, 1/A/2056:2059 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_3JBO_065 | 1/A/1935:1938, 1/A/2052:2056 | No text annotation | geometric IL_4V88_464 NA | |
| IL_3JBO_066 | 1/A/1939:1941, 1/A/2049:2051 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_3JBO_067 | 1/A/1941:1943, 1/A/2046:2049 | No text annotation | geometric IL_4ZC7_002 NA | |
| IL_3JBO_068 | 1/A/1947:1949, 1/A/2040:2042 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_87907.2 | |
| IL_3JBO_069 | 1/A/1950:1953, 1/A/2036:2039 | Double sheared | geometric IL_4V88_468 NA | |
| IL_3JBO_070 | 1/A/1953:1955, 1/A/2035:2036 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_3JBO_071 | 1/A/1955:1956, 1/A/2033:2035 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_3JBO_072 | 1/A/1957:1959, 1/A/2031:2032 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_3JBO_073 | 1/A/1962:1964, 1/A/2026:2028 | Isolated non-canonical cWW pair | geometric IL_3GM7_002 IL_87907.2 | |
| IL_3JBO_074 | 1/A/1966:1969, 1/A/2021:2024 | Double sheared | geometric IL_4V88_471 NA | |
| IL_3JBO_075 | 1/A/1970:1972, 1/A/2018:2020 | Isolated non-canonical cWW pair | geometric IL_4KYY_002 IL_07785.1 | |
| IL_3JBO_076 | 1/A/1975:1979, 1/A/2011:2015 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_3JBO_077 | 1/A/1979:1982, 1/A/2008:2011 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_3JBO_078 | 1/A/1983:1984, 1/A/2005:2007 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_3JBO_079 | 1/AA/13:15, 1/AC/151:152 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_3JBO_080 | 1/AA/31:38, 1/AA/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_3JBO_081 | 1/AA/82:89, 1/AA/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_3JBO_082 | 1/AA/118:123, 1/AA/158:159 | Multiple bulged bases | geometric IL_5J7L_005 IL_82107.5 | |
| IL_3JBO_226 | 1/AA/118:124, 1/AA/153:159 | No text annotation | ||
| IL_3JBO_083 | 1/AA/123:124, 1/AA/153:158 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_3JBO_084 | 1/AA/126:128, 1/AA/149:151 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_3JBO_085 | 1/AA/130:134, 1/AA/143:147 | Triple non-canonical cWW pairs | geometric IL_8VMB_003 IL_49751.4 | |
| IL_3JBO_086 | 1/AA/165:168, 1/AA/263:266 | Tandem non-canonical cWW pairs | geometric IL_5TBW_128 NA | |
| IL_3JBO_087 | 1/AA/173:175, 1/AA/255:258 | No text annotation | geometric IL_4QIK_001 IL_99358.1 | |
| IL_3JBO_088 | 1/AA/178:183, 1/AA/248:252 | No text annotation | ||
| IL_3JBO_089 | 1/AA/186:191, 1/AA/240:245 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_3JBO_228 | 1/AA/186:193, 1/AA/238:245 | No text annotation | ||
| IL_3JBO_090 | 1/AA/197:199, 1/AA/212:213 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_3JBO_091 | 1/AA/345:347, 1/AC/29:30 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_3JBO_092 | 1/AA/385:388, 1/AA/399:413 | No text annotation | ||
| IL_3JBO_093 | 1/AA/414:420, 1/AC/17:23 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_04021.2 | |
| IL_3JBO_094 | 1/AA/436:438, 1/AA/709:711 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_3JBO_095 | 1/AA/519:522, 1/AA/633:636 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_77658.1 | |
| IL_3JBO_096 | 1/AA/523:525, 1/AA/629:632 | No text annotation | ||
| IL_3JBO_242 | 1/AA/523:526, 1/AA/629:632 | No text annotation | homologous IL_8CRE_018 IL_85033.2 | |
| IL_3JBO_097 | 1/AA/525:527, 1/AA/628:629 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_3JBO_098 | 1/AA/529:533, 1/AA/619:626 | No text annotation | ||
| IL_3JBO_099 | 1/AA/584:586, 1/AA/605:606 | Single bulged C | geometric IL_5F5H_001 IL_61258.15 | |
| IL_3JBO_100 | 1/AA/591:594, 1/AA/599:600 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_3JBO_101 | 1/AA/658:661, 1/AA/672:675 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_3JBO_102 | 1/AA/743:745, 1/AA/914:916 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_3JBO_103 | 1/AA/758:762, 1/AA/777:794 | No text annotation | ||
| IL_3JBO_104 | 1/AA/827:833, 1/AA/861:868 | No text annotation | ||
| IL_3JBO_105 | 1/AA/875:876, 1/AA/898:900 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_3JBO_243 | 1/AA/880:881, 1/AA/892:894 | Minor groove platform | geometric IL_8P9A_267 IL_51454.3 | |
| IL_3JBO_107 | 1/AA/922:924, 1/AA/1057:1059 | Isolated non-canonical cWW pair | homologous IL_5TBW_027 NA | |
| IL_3JBO_108 | 1/AA/924:928, 1/AA/1050:1057 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_3JBO_109 | 1/AA/947:948, 1/AA/1014:1016 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_3JBO_110 | 1/AA/952:953, 1/AA/978:980 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_3JBO_111 | 1/AA/953:957, 1/AA/974:978 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_3JBO_112 | 1/AA/988:991, 1/AA/1007:1009 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_3JBO_113 | 1/AA/992:994, 1/AA/1005:1006 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_3JBO_114 | 1/AA/1026:1028, 1/AA/1038:1042 | Multiple bulged bases | homologous IL_5TBW_033 NA | |
| IL_3JBO_115 | 1/AA/1088:1089, 1/AA/1239:1241 | Single stack bend | homologous IL_5TBW_035 NA | |
| IL_3JBO_116 | 1/AA/1095:1104, 1/AA/1228:1233 | No text annotation | ||
| IL_3JBO_117 | 1/AA/1105:1107, 1/AA/1226:1227 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_3JBO_118 | 1/AA/1113:1119, 1/AA/1175:1181 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_3JBO_119 | 1/AA/1119:1120, 1/AA/1173:1175 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_3JBO_120 | 1/AA/1121:1126, 1/AA/1169:1172 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_3JBO_121 | 1/AA/1128:1131, 1/AA/1164:1167 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_77658.1 | |
| IL_3JBO_122 | 1/AA/1131:1133, 1/AA/1162:1164 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_3JBO_123 | 1/AA/1135:1139, 1/AA/1158:1160 | Isolated non-canonical cWW pair | geometric IL_6CZR_122 NA | |
| IL_3JBO_124 | 1/AA/1191:1193, 1/AA/1214:1216 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_3JBO_125 | 1/AA/1198:1200, 1/AA/1208:1209 | Single bulged A | geometric IL_7RQB_048 NA | |
| IL_3JBO_126 | 1/AA/1248:1250, 1/AA/1264:1266 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_3JBO_127 | 1/AA/1294:1299, 1/AA/1456:1461 | UAA/GAN with extra cWW | geometric IL_7RQB_107 NA | |
| IL_3JBO_128 | 1/AA/1301:1308, 1/AA/1453:1454 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_3JBO_129 | 1/AA/1308:1310, 1/AA/1452:1453 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_3JBO_130 | 1/AA/1315:1322, 1/AA/1442:1447 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_3JBO_131 | 1/AA/1322:1333, 1/AA/1427:1442 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_3JBO_132 | 1/AA/1335:1337, 1/AA/1424:1425 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_3JBO_133 | 1/AA/1475:1481, 1/AA/1499:1506 | No text annotation | ||
| IL_3JBO_134 | 1/AA/1525:1527, 1/AA/1577:1580 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_3JBO_135 | 1/AA/1530:1534, 1/AA/1569:1574 | No text annotation | ||
| IL_3JBO_136 | 1/AA/1536:1543, 1/AA/1563:1567 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_3JBO_137 | 1/AA/1548:1550, 1/AA/1557:1558 | Single bulged U | geometric IL_5TBW_025 NA | |
| IL_3JBO_138 | 1/AA/1593:1599, 1/AA/2647:2652 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_3JBO_139 | 1/AA/1649:1654, 1/AA/1662:1665 | No text annotation | geometric IL_5TBW_062 NA | |
| IL_3JBO_140 | 1/AA/1681:1685, 1/AA/1728:1733 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_3JBO_141 | 1/AA/1759:1762, 1/AA/2090:2095 | No text annotation | ||
| IL_3JBO_142 | 1/AA/1768:1770, 1/AA/2082:2084 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_3JBO_143 | 1/AA/1800:1804, 1/AA/2028:2032 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_3JBO_144 | 1/AA/1816:1818, 1/AA/2008:2010 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_3JBO_145 | 1/AA/1823:1824, 1/AA/2001:2003 | Major groove platform | geometric IL_7RQB_078 NA | |
| IL_3JBO_146 | 1/AA/1826:1829, 1/AA/1996:1999 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_3JBO_147 | 1/AA/1849:1853, 1/AA/1967:1972 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_3JBO_148 | 1/AA/1861:1863, 1/AA/1895:1897 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_87907.2 | |
| IL_3JBO_149 | 1/AA/1868:1874, 1/AA/1884:1890 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_3JBO_150 | 1/AA/1907:1910, 1/AA/1959:1962 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_3JBO_151 | 1/AA/1973:1976, 1/AA/1992:1995 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_3JBO_152 | 1/AA/1976:1978, 1/AA/1990:1992 | Isolated non-canonical cWW pair | geometric IL_4E48_005 IL_87907.2 | |
| IL_3JBO_153 | 1/AA/2036:2040, 1/AA/2069:2073 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
| IL_3JBO_154 | 1/AA/2151:2156, 1/AA/2640:2642 | No text annotation | geometric IL_7RQB_064 NA | |
| IL_3JBO_155 | 1/AA/2163:2165, 1/AA/2631:2633 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_3JBO_156 | 1/AA/2166:2169, 1/AA/2629:2630 | Major groove platform; stack outside cWW | homologous IL_5TBW_076 NA | |
| IL_3JBO_233 | 1/AA/2166:2174, 1/AA/2626:2630 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_3JBO_157 | 1/AA/2169:2174, 1/AA/2626:2629 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_3JBO_158 | 1/AA/2186:2191, 1/AA/2196:2202 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_3JBO_159 | 1/AA/2208:2210, 1/AA/2399:2401 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_3JBO_160 | 1/AA/2215:2216, 1/AA/2391:2394 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_3JBO_161 | 1/AA/2421:2422, 1/AA/2616:2618 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_3JBO_162 | 1/AA/2449:2455, 1/AA/2466:2473 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_3JBO_163 | 1/AA/2489:2492, 1/AA/2538:2539 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_3JBO_164 | 1/AA/2493:2494, 1/AA/2534:2537 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_3JBO_165 | 1/AA/2497:2499, 1/AA/2530:2531 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_3JBO_166 | 1/AA/2499:2503, 1/AA/2528:2530 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_3JBO_167 | 1/AA/2504:2509, 1/AA/2522:2527 | No text annotation | ||
| IL_3JBO_168 | 1/AA/2569:2570, 1/AA/2600:2603 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_3JBO_169 | 1/AA/2570:2581, 1/AA/2597:2600 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_3JBO_170 | 1/AA/2684:2687, 1/AA/3345:3347 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_3JBO_171 | 1/AA/2689:2691, 1/AA/3340:3343 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_3JBO_172 | 1/AA/2702:2704, 1/AA/3170:3171 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_3JBO_173 | 1/AA/2705:2706, 1/AA/3166:3169 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_3JBO_174 | 1/AA/2716:2718, 1/AA/2943:2946 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_3JBO_175 | 1/AA/2738:2739, 1/AA/2809:2811 | Stack outside cWW | geometric IL_6JQ6_004 IL_66635.5 | |
| IL_3JBO_176 | 1/AA/2744:2747, 1/AA/2801:2804 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_3JBO_177 | 1/AA/2953:2954, 1/AA/2964:2966 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_3JBO_178 | 1/AA/3005:3007, 1/AA/3025:3029 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_3JBO_235 | 1/AA/3110:3113, 1/AA/3145:3146 | No text annotation | ||
| IL_3JBO_180 | 1/AA/3115:3124, 1/AA/3136:3143 | No text annotation | ||
| IL_3JBO_181 | 1/AA/3182:3183, 1/AA/3224:3226 | Major groove platform | geometric IL_1I6U_001 IL_48076.6 | |
| IL_3JBO_182 | 1/AA/3183:3185, 1/AA/3222:3224 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_3JBO_183 | 1/AA/3185:3187, 1/AA/3221:3222 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_3JBO_184 | 1/AA/3187:3189, 1/AA/3217:3221 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_51387.3 | |
| IL_3JBO_185 | 1/AA/3194:3198, 1/AA/3208:3212 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_3JBO_186 | 1/AA/3235:3236, 1/AA/3308:3310 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_3JBO_187 | 1/AA/3238:3240, 1/AA/3302:3306 | Isolated non-canonical cWW with bulges | homologous IL_5TBW_108 NA | |
| IL_3JBO_188 | 1/AA/3240:3241, 1/AA/3299:3302 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_3JBO_189 | 1/AA/3250:3251, 1/AA/3268:3271 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_3JBO_190 | 1/AA/3277:3279, 1/AA/3285:3287 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_3JBO_191 | 1/AA/3319:3320, 1/AA/3329:3331 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_3JBO_192 | 1/AA/3360:3363, 1/AA/3375:3379 | No text annotation | ||
| IL_3JBO_193 | 1/AA/3390:3393, 1/AA/3524:3530 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_3JBO_194 | 1/AA/3398:3400, 1/AA/3426:3428 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_3JBO_195 | 1/AA/3405:3411, 1/AA/3416:3421 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.4 | |
| IL_3JBO_196 | 1/AA/3433:3437, 1/AA/3476:3478 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_3JBO_197 | 1/AA/3440:3444, 1/AA/3469:3473 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_3JBO_198 | 1/AA/3448:3449, 1/AA/3462:3465 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_3JBO_199 | 1/AA/3486:3491, 1/AA/3512:3517 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_3JBO_200 | 1/AA/3554:3573, 1/AA/3674:3675 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_3JBO_201 | 1/AA/3580:3582, 1/AA/3620:3621 | Single bulged A | geometric IL_7A0S_012 IL_31462.7 | |
| IL_3JBO_202 | 1/AA/3583:3591, 1/AA/3614:3619 | No text annotation | ||
| IL_3JBO_236 | 1/AA/3583:3592, 1/AA/3612:3619 | No text annotation | ||
| IL_3JBO_203 | 1/AA/3591:3592, 1/AA/3612:3614 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_3JBO_204 | 1/AA/3629:3632, 1/AA/3653:3656 | Tandem non-canonical cWW pairs | geometric IL_1L9A_002 NA | |
| IL_3JBO_205 | 1/AA/3636:3641, 1/AA/3644:3649 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_3JBO_206 | 1/AA/3694:3697, 1/AA/3705:3708 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_85033.2 | |
| IL_3JBO_207 | 1/AA/3714:3716, 1/AA/3775:3777 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_07785.1 | |
| IL_3JBO_208 | 1/AA/3716:3717, 1/AA/3773:3775 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_3JBO_209 | 1/AA/3720:3722, 1/AA/3765:3770 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_3JBO_210 | 1/AA/3724:3729, 1/AA/3759:3763 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_3JBO_211 | 1/AA/3731:3733, 1/AA/3756:3757 | Single bulged U | geometric IL_4FRG_002 IL_89505.4 | |
| IL_3JBO_212 | 1/AA/3734:3737, 1/AA/3752:3755 | Double sheared; A in syn | homologous IL_5TBW_135 NA | |
| IL_3JBO_213 | 1/AB/15:16, 1/AB/62:64 | Single bulged A | geometric IL_5TBW_372 NA | |
| IL_3JBO_214 | 1/AB/21:26, 1/AB/56:57 | No text annotation | ||
| IL_3JBO_244 | 1/AB/21:27, 1/AB/52:57 | No text annotation | ||
| IL_3JBO_215 | 1/AB/26:27, 1/AB/52:56 | No text annotation | ||
| IL_3JBO_216 | 1/AB/28:29, 1/AB/48:51 | Major groove minor groove platform; mini C-loop | geometric IL_7RQB_113 NA | |
| IL_3JBO_217 | 1/AB/32:36, 1/AB/41:45 | Symmetric double minor groove platform | geometric IL_4V9F_104 IL_58103.11 | |
| IL_3JBO_218 | 1/AB/71:78, 1/AB/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.10 | |
| IL_3JBO_219 | 1/AB/82:85, 1/AB/92:94 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
| IL_3JBO_220 | 1/AC/48:68, 1/AC/99:103 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_3JBO_221 | 1/AC/68:70, 1/AC/96:99 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_3JBO_222 | 1/AC/73:76, 1/AC/83:93 | No text annotation | ||
| IL_3JBO_223 | 1/AC/122:123, 1/AC/138:141 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JBO_019 | C-loop with extra cWW pair | ||
| IL_3JBO_020 | No text annotation | ||
| IL_3JBO_225 | No text annotation | ||
| IL_3JBO_227 | No text annotation | ||
| IL_3JBO_229 | Isolated cWH basepair | ||
| IL_3JBO_230 | Tandem non-canonical cWW pairs | ||
| IL_3JBO_231 | Triple non-canonical cWW pairs | ||
| IL_3JBO_106 | Minor groove platform with extra cWW | ||
| IL_3JBO_232 | Tandem non-canonical cWW pairs | ||
| IL_3JBO_234 | Isolated non-canonical cWW with bulges | ||
| IL_3JBO_179 | Isolated non-canonical cWW pair | ||
| IL_3JBO_237 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3JBO_001 | 1/A/41:42, 1/A/439:445, 1/A/470:472 | No text annotation | geometric J3_4V88_078 NA | |
| J3_3JBO_035 | 1/A/41:48, 1/A/437:445, 1/A/470:472 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_3JBO_002 | 1/A/640:642, 1/A/929:933, 1/A/1034:1035 | No text annotation | geometric J3_4V88_080 NA | |
| J3_3JBO_036 | 1/A/640:642, 1/A/929:934, 1/A/1031:1035 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_3JBO_003 | 1/A/810:813, 1/A/823:825, 1/A/848:853 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_3JBO_004 | 1/A/950:953, 1/A/997:1005, 1/A/1012:1016 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
| J3_3JBO_005 | 1/A/1106:1108, 1/A/1180:1184, 1/A/1191:1195 | No text annotation | ||
| J3_3JBO_006 | 1/A/1262:1265, 1/A/1878:1884, 1/A/1906:1913 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_3JBO_007 | 1/A/1269:1272, 1/A/1714:1716, 1/A/1871:1874 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_3JBO_008 | 1/A/1281:1288, 1/A/1299:1310, 1/A/1700:1704 | No text annotation | homologous J3_8P9A_078 J3_83516.4 | |
| J3_3JBO_009 | 1/A/1316:1321, 1/A/1364:1368, 1/A/1688:1694 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_3JBO_010 | 1/A/1384:1389, 1/A/1429:1434, 1/A/1665:1670 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_3JBO_011 | 1/A/1394:1395, 1/A/1405:1408, 1/A/1420:1424 | No text annotation | homologous J3_8P9A_081 J3_76043.3 | |
| J3_3JBO_012 | 1/A/1438:1440, 1/A/1632:1635, 1/A/1658:1661 | No text annotation | homologous J3_8C3A_043 NA | |
| J3_3JBO_037 | 1/A/1438:1440, 1/A/1632:1637, 1/A/1653:1661 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_3JBO_013 | 1/A/1716:1720, 1/A/1830:1837, 1/A/1868:1871 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_3JBO_038 | 1/A/1734:1745, 1/A/1784:1790, 1/A/1809:1814 | No text annotation | ||
| J3_3JBO_014 | 1/AA/113:117, 1/AA/160:163, 1/AA/268:274 | No text annotation | ||
| J3_3JBO_039 | 1/AA/193:197, 1/AA/213:222, 1/AA/234:238 | No text annotation | geometric J3_8VTW_041 NA | |
| J3_3JBO_040 | 1/AA/348:364, 1/AA/371:376, 1/AC/25:28 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_3JBO_015 | 1/AA/377:385, 1/AA/413:414, 1/AC/23:24 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_3JBO_041 | 1/AA/377:388, 1/AA/399:414, 1/AC/23:24 | No text annotation | ||
| J3_3JBO_016 | 1/AA/446:454, 1/AA/501:506, 1/AA/692:701 | No text annotation | ||
| J3_3JBO_042 | 1/AA/446:455, 1/AA/500:506, 1/AA/692:701 | No text annotation | ||
| J3_3JBO_017 | 1/AA/512:514, 1/AA/641:653, 1/AA/680:686 | No text annotation | ||
| J3_3JBO_018 | 1/AA/540:548, 1/AA/580:582, 1/AA/608:612 | No text annotation | ||
| J3_3JBO_043 | 1/AA/540:548, 1/AA/580:586, 1/AA/605:612 | No text annotation | ||
| J3_3JBO_019 | 1/AA/933:939, 1/AA/1024:1026, 1/AA/1042:1045 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_3JBO_020 | 1/AA/948:950, 1/AA/982:987, 1/AA/1010:1014 | No text annotation | ||
| J3_3JBO_021 | 1/AA/1108:1109, 1/AA/1185:1189, 1/AA/1218:1225 | No text annotation | ||
| J3_3JBO_022 | 1/AA/1633:1634, 1/AA/2124:2126, 1/AA/2138:2145 | No text annotation | ||
| J3_3JBO_023 | 1/AA/1637:1640, 1/AA/2104:2110, 1/AA/2119:2121 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_3JBO_024 | 1/AA/1675:1680, 1/AA/1734:1738, 1/AA/1755:1756 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_3JBO_025 | 1/AA/1688:1691, 1/AA/1700:1710, 1/AA/1723:1725 | No text annotation | ||
| J3_3JBO_026 | 1/AA/1773:1780, 1/AA/2033:2034, 1/AA/2075:2079 | No text annotation | ||
| J3_3JBO_027 | 1/AA/1780:1781, 1/AA/1790:1800, 1/AA/2032:2033 | No text annotation | ||
| J3_3JBO_044 | 1/AA/1809:1813, 1/AA/2013:2014, 1/AA/2018:2023 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_3JBO_028 | 1/AA/1854:1860, 1/AA/1898:1905, 1/AA/1964:1966 | No text annotation | ||
| J3_3JBO_029 | 1/AA/2725:2728, 1/AA/2821:2825, 1/AA/2930:2936 | No text annotation | geometric J3_4V9F_007 J3_97609.1 | |
| J3_3JBO_030 | 1/AA/2990:2992, 1/AA/3093:3104, 1/AA/3152:3157 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_3JBO_031 | 1/AA/3003:3005, 1/AA/3029:3031, 1/AA/3040:3045 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_3JBO_032 | 1/AA/3245:3248, 1/AA/3273:3275, 1/AA/3289:3295 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_3JBO_045 | 1/AA/3575:3580, 1/AA/3621:3627, 1/AA/3658:3672 | No text annotation | ||
| J3_3JBO_033 | 1/AA/3691:3693, 1/AA/3709:3712, 1/AA/3779:3783 | No text annotation | ||
| J3_3JBO_034 | 1/AB/9:14, 1/AB/65:66, 1/AB/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_3JBO_046 | 1/AC/48:49, 1/AC/62:68, 1/AC/99:103 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_3JBO_001 | 1/7/7:10, 1/7/25:28, 1/7/42:49, 1/7/65:66 | tRNA junction | homologous J4_4V90_004 J4_94519.1 | |
| J4_3JBO_002 | 1/A/101:109, 1/A/313:315, 1/A/363:367, 1/A/389:390 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_3JBO_003 | 1/A/629:631, 1/A/1044:1049, 1/A/1090:1101, 1/A/1204:1205 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J4_3JBO_004 | 1/AA/112:113, 1/AA/274:279, 1/AA/300:307, 1/AA/324:327 | No text annotation | ||
| J4_3JBO_005 | 1/AA/193:197, 1/AA/213:216, 1/AA/220:222, 1/AA/234:238 | No text annotation | ||
| J4_3JBO_006 | 1/AA/1600:1606, 1/AA/1624:1633, 1/AA/2145:2148, 1/AA/2645:2646 | No text annotation | ||
| J4_3JBO_007 | 1/AA/1641:1645, 1/AA/1669:1674, 1/AA/1757:1758, 1/AA/2096:2103 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_3JBO_008 | 1/AA/1829:1830, 1/AA/1848:1849, 1/AA/1972:1976, 1/AA/1992:1996 | No text annotation | ||
| J4_3JBO_009 | 1/AA/2423:2427, 1/AA/2439:2443, 1/AA/2479:2483, 1/AA/2610:2615 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_3JBO_010 | 1/AA/2485:2487, 1/AA/2541:2542, 1/AA/2560:2569, 1/AA/2603:2608 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_3JBO_011 | 1/AA/2993:2997, 1/AA/3051:3055, 1/AA/3079:3081, 1/AA/3090:3092 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_3JBO_012 | 1/AA/3396:3398, 1/AA/3428:3429, 1/AA/3482:3484, 1/AA/3519:3521 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J5_3JBO_001 | 1/A/31:35, 1/A/479:485, 1/A/516:521, 1/A/550:553, 1/A/599:602 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_3JBO_014 | 1/A/31:35, 1/A/479:485, 1/A/516:523, 1/A/543:553, 1/A/599:602 | No text annotation | ||
| J5_3JBO_003 | 1/A/54:57, 1/A/92:99, 1/A/392:394, 1/A/415:417, 1/A/428:432 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_3JBO_004 | 1/A/126:140, 1/A/171:179, 1/A/206:210, 1/A/260:266, 1/A/295:299 | No text annotation | ||
| J5_3JBO_005 | 1/A/126:140, 1/A/171:179, 1/A/206:210, 1/A/260:268, 1/A/294:299 | No text annotation | ||
| J5_3JBO_015 | 1/A/643:648, 1/A/752:755, 1/A/792:793, 1/A/871:877, 1/A/926:928 | No text annotation | ||
| J5_3JBO_007 | 1/AA/20:22, 1/AC/39:46, 1/AC/105:110, 1/AC/118:119, 1/AC/144:146 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_3JBO_008 | 1/AA/736:741, 1/AA/918:921, 1/AA/1060:1063, 1/AA/1524:1525, 1/AA/1580:1586 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_3JBO_009 | 1/AA/753:756, 1/AA/796:800, 1/AA/807:823, 1/AA/872:873, 1/AA/902:906 | No text annotation | ||
| J5_3JBO_010 | 1/AA/1600:1606, 1/AA/1624:1634, 1/AA/2124:2126, 1/AA/2138:2148, 1/AA/2645:2646 | No text annotation | ||
| J5_3JBO_011 | 1/AA/2174:2182, 1/AA/2206:2207, 1/AA/2402:2403, 1/AA/2407:2415, 1/AA/2624:2626 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_3JBO_012 | 1/AA/2692:2699, 1/AA/3174:3182, 1/AA/3226:3235, 1/AA/3310:3316, 1/AA/3334:3339 | No text annotation | ||
| J5_3JBO_013 | 1/AA/2709:2712, 1/AA/2950:2953, 1/AA/2966:2967, 1/AA/2989:2990, 1/AA/3157:3163 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_3JBO_001 | 1/AA/23:28, 1/AA/56:68, 1/AA/75:79, 1/AA/106:110, 1/AA/329:338, 1/AC/37:38 | No text annotation | ||
| J6_3JBO_002 | 1/AA/2709:2712, 1/AA/2950:2953, 1/AA/2966:2967, 1/AA/2989:2992, 1/AA/3093:3104, 1/AA/3152:3163 | No text annotation | ||
| J7_3JBO_001 | 1/AA/1068:1074, 1/AA/1085:1087, 1/AA/1242:1245, 1/AA/1269:1274, 1/AA/1285:1289, 1/AA/1466:1467, 1/AA/1514:1519 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J5_3JBO_002 | No text annotation | ||
| J5_3JBO_006 | No text annotation |
Coloring options: