RNA 3D Hub //

3JBO Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3JBO_0011/7/13:22No text annotation
homologous
HL_6PMO_003
NA
HL_3JBO_0021/7/31:39tRNA anticodon loop
homologous
HL_5UD5_002
HL_77082.1
HL_3JBO_0031/7/53:61T-loop with 2 stacked bulged bases
homologous
HL_5B63_004
HL_28252.9
HL_3JBO_0041/A/7:17No text annotation
geometric
HL_4V88_186
NA
HL_3JBO_0051/A/73:79No text annotation
HL_3JBO_0061/A/152:158GNRA
geometric
HL_5TBW_047
NA
HL_3JBO_0071/A/184:201No text annotation
geometric
HL_5TBW_012
NA
HL_3JBO_0081/A/245:252T-loop with 2 stacked bulged bases
geometric
HL_5DH6_002
HL_01609.3
HL_3JBO_0091/A/270:292UNCG variation
geometric
HL_2CZJ_007
NA
HL_3JBO_0101/A/336:344GNRA related
geometric
HL_4V88_193
NA
HL_3JBO_0111/A/374:379No text annotation
geometric
HL_4V88_194
NA
HL_3JBO_0121/A/399:410No text annotation
geometric
HL_4V88_195
NA
HL_3JBO_0131/A/420:425UNCG
geometric
HL_5J7L_030
HL_34617.5
HL_3JBO_0141/A/456:462No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_3JBO_0151/A/492:508No text annotation
HL_3JBO_0161/A/528:538No text annotation
geometric
HL_4TUE_219
HL_75293.5
HL_3JBO_0171/A/576:581GNRA variation
geometric
HL_4V88_200
NA
HL_3JBO_0181/A/653:747No text annotation
geometric
HL_5TBW_018
NA
HL_3JBO_0191/A/814:822No text annotation
geometric
HL_4V88_203
NA
HL_3JBO_0201/A/837:843No text annotation
geometric
HL_4KR9_003
HL_70782.2
HL_3JBO_0211/A/892:910No text annotation
HL_3JBO_0221/A/969:978No text annotation
geometric
HL_4LFB_015
HL_75293.5
HL_3JBO_0231/A/1006:1011GNRA
geometric
HL_4V88_207
NA
HL_3JBO_0241/A/1066:1076No text annotation
geometric
HL_5J7L_017
HL_75293.5
HL_3JBO_0251/A/1185:1190GNRA
geometric
HL_4V88_210
NA
HL_3JBO_0261/A/1222:1227GNRA
geometric
HL_4V9F_048
HL_37824.8
HL_3JBO_0271/A/1289:1298No text annotation
geometric
HL_4V9F_011
HL_75660.5
HL_3JBO_0281/A/1322:1363Externally structured
geometric
HL_8C3A_022
NA
HL_3JBO_0291/A/1397:1403No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_3JBO_0301/A/1411:1418T-loop related
geometric
HL_5J7L_024
HL_77436.5
HL_3JBO_0311/A/1461:1602No text annotation
HL_3JBO_0321/A/1642:1648UNCG variation
geometric
HL_2CZJ_007
NA
HL_3JBO_0331/A/1749:1780No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_3JBO_0341/A/1797:1802GNRA
geometric
HL_4V88_218
NA
HL_3JBO_0351/A/1847:1858No text annotation
geometric
HL_4V88_219
NA
HL_3JBO_0361/A/1891:1899No text annotation
geometric
HL_4V88_220
NA
HL_3JBO_0371/A/1985:2004No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_3JBO_0381/A/2070:2075No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_3JBO_0391/AA/38:45No text annotation
geometric
HL_4V9F_006
HL_30068.2
HL_3JBO_0401/AA/69:74No text annotation
homologous
HL_5TBW_002
NA
HL_3JBO_0411/AA/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_3JBO_0421/AA/135:142No text annotation
HL_3JBO_0431/AA/202:209T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_3JBO_0441/AA/216:220No text annotation
homologous
HL_8C3A_006
NA
HL_3JBO_0451/AA/224:232T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_3JBO_0461/AA/285:294No text annotation
homologous
HL_8C3A_008
NA
HL_3JBO_0471/AA/311:320Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_3JBO_0481/AA/365:370GNRA
homologous
HL_5TBW_010
NA
HL_3JBO_0491/AA/391:396GNRA
homologous
HL_5TBW_011
NA
HL_3JBO_0501/AA/552:576No text annotation
HL_3JBO_1111/AA/591:600No text annotation
HL_3JBO_0511/AA/594:599No text annotation
HL_3JBO_0521/AA/663:670UNCG variation
geometric
HL_5J7L_200
HL_08100.1
HL_3JBO_0531/AA/718:727T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_3JBO_0541/AA/764:775No text annotation
homologous
HL_5TBW_015
NA
HL_3JBO_0551/AA/801:806GNRA
homologous
HL_5TBW_016
NA
HL_3JBO_0561/AA/835:859No text annotation
HL_3JBO_0571/AA/883:890UNCG variation
geometric
HL_2CZJ_007
NA
HL_3JBO_0581/AA/963:968GNRA
homologous
HL_8C3A_019
NA
HL_3JBO_0591/AA/995:1004No text annotation
homologous
HL_5TBW_020
NA
HL_3JBO_0601/AA/1029:1037No text annotation
homologous
HL_5TBW_021
NA
HL_3JBO_0611/AA/1077:1082Externally structured
homologous
HL_5TBW_022
NA
HL_3JBO_0621/AA/1200:1208No text annotation
homologous
HL_8C3A_024
NA
HL_3JBO_0631/AA/1254:1260GNRA
homologous
HL_8C3A_025
NA
HL_3JBO_0641/AA/1276:1283No text annotation
homologous
HL_5TBW_026
NA
HL_3JBO_0651/AA/1486:1494No text annotation
HL_3JBO_0661/AA/1551:1556GNRA
homologous
HL_8C3A_030
NA
HL_3JBO_0671/AA/1611:1619T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_3JBO_0681/AA/1654:1662No text annotation
geometric
HL_7A0S_041
NA
HL_3JBO_0691/AA/1693:1698GNRA variation
homologous
HL_5TBW_033
NA
HL_3JBO_0701/AA/1713:1720No text annotation
geometric
HL_7KI3_001
HL_75660.5
HL_3JBO_0711/AA/1742:1751No text annotation
homologous
HL_8C3A_035
NA
HL_3JBO_0721/AA/1783:1788GNRA
geometric
HL_5TBW_036
NA
HL_3JBO_0731/AA/1835:1843No text annotation
homologous
HL_8C3A_037
NA
HL_3JBO_0741/AA/1876:1882No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_3JBO_0751/AA/1912:1957No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_3JBO_0761/AA/1978:1990No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_3JBO_0771/AA/2014:2018Mini UNCG
homologous
HL_8P9A_151
HL_48778.2
HL_3JBO_0781/AA/2111:2118No text annotation
homologous
HL_5TBW_041
NA
HL_3JBO_0791/AA/2129:2135GNRA
homologous
HL_8C3A_042
NA
HL_3JBO_0801/AA/2191:2196UNCG
homologous
HL_8C3A_043
NA
HL_3JBO_0811/AA/2220:2387No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_3JBO_0821/AA/2403:2407No text annotation
homologous
HL_8C3A_045
NA
HL_3JBO_0831/AA/2428:2438No text annotation
homologous
HL_5TBW_046
NA
HL_3JBO_0841/AA/2458:2463GNRA
homologous
HL_8C3A_047
NA
HL_3JBO_0851/AA/2512:2519GNRA with extra cWW
geometric
HL_7A0S_056
HL_04259.3
HL_3JBO_0861/AA/2546:2556No text annotation
homologous
HL_5TBW_049
NA
HL_3JBO_0871/AA/2585:2593No text annotation
homologous
HL_5TBW_050
NA
HL_3JBO_0881/AA/2662:2671No text annotation
homologous
HL_8C3A_051
NA
HL_3JBO_1121/AA/2829:2926No text annotation
HL_3JBO_0891/AA/2836:2917No text annotation
geometric
HL_8C3A_012
NA
HL_3JBO_0901/AA/2955:2963No text annotation
homologous
HL_5TBW_054
NA
HL_3JBO_0911/AA/2972:2984No text annotation
homologous
HL_8C3A_056
NA
HL_3JBO_0921/AA/3012:3020No text annotation
HL_3JBO_0931/AA/3032:3039Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_3JBO_0941/AA/3063:3071No text annotation
homologous
HL_8C3A_059
NA
HL_3JBO_0951/AA/3083:3088No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_3JBO_0961/AA/3127:3133No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_3JBO_0971/AA/3199:3207No text annotation
homologous
HL_5TBW_061
NA
HL_3JBO_0981/AA/3256:3263No text annotation
homologous
HL_8C3A_063
NA
HL_3JBO_0991/AA/3279:3285No text annotation
geometric
HL_5TBW_063
NA
HL_3JBO_1001/AA/3322:3327GNRA
homologous
HL_8C3A_065
NA
HL_3JBO_1011/AA/3411:3416GNRA
homologous
HL_8C3A_066
NA
HL_3JBO_1021/AA/3453:3458Ribsomal LSU H95
homologous
HL_5TBW_066
NA
HL_3JBO_1031/AA/3494:3509No text annotation
HL_3JBO_1131/AA/3637:3648No text annotation
geometric
HL_5TBW_226
NA
HL_3JBO_1041/AA/3697:3705No text annotation
homologous
HL_8C3A_071
NA
HL_3JBO_1051/AA/3740:3749No text annotation
geometric
HL_8KAH_003
NA
HL_3JBO_1141/AB/32:45No text annotation
homologous
HL_4V9F_074
HL_97756.2
HL_3JBO_1061/AB/36:41No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_3JBO_1071/AB/86:91GNRA
geometric
HL_5M0J_002
HL_37824.8
HL_3JBO_1151/AC/51:60Pseudoknot with intercalation
homologous
HL_8C3A_229
NA
HL_3JBO_1081/AC/77:82No text annotation
geometric
HL_4V88_194
NA
HL_3JBO_1091/AC/111:117No text annotation
geometric
HL_5TBW_075
NA
HL_3JBO_1101/AC/128:133No text annotation
geometric
HL_4V9F_003
HL_75660.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3JBO_0011/A/24:26,
1/A/607:608		Single bulged C
geometric
IL_7KGA_004
IL_61258.15
IL_3JBO_0021/A/37:41,
1/A/472:477		Triple sheared related
geometric
IL_4V88_386
NA
IL_3JBO_0031/A/42:48,
1/A/437:439		No text annotation
geometric
IL_4V88_387
NA
IL_3JBO_0041/A/50:52,
1/A/434:435		Minor groove platform
geometric
IL_5J7L_004
IL_51454.3
IL_3JBO_0051/A/58:63,
1/A/89:91		No text annotation
IL_3JBO_0061/A/64:68,
1/A/84:88		No text annotation
homologous
IL_8P9A_379
IL_21667.1
IL_3JBO_0071/A/111:114,
1/A/308:311		Tandem non-canonical cWW pairs
geometric
IL_4V88_391
NA
IL_3JBO_0081/A/115:118,
1/A/306:307		Major groove intercalation
geometric
IL_5J7L_315
IL_82107.5
IL_3JBO_0091/A/119:123,
1/A/302:305		UAA/GAN related
geometric
IL_3LOA_001
IL_64231.5
IL_3JBO_0101/A/141:147,
1/A/163:170		tWH-tWH-tHW-tHW
geometric
IL_4V88_394
NA
IL_3JBO_0111/A/216:245,
1/A/252:254		No text annotation
IL_3JBO_0121/A/266:268,
1/A/294:295		Single bulged A
geometric
IL_4V88_399
NA
IL_3JBO_0131/A/317:322,
1/A/354:361		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_3JBO_0141/A/324:329,
1/A/351:352		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_3JBO_0151/A/369:371,
1/A/382:387		No text annotation
geometric
IL_4V88_404
NA
IL_3JBO_0161/A/395:397,
1/A/412:414		Isolated cWH basepair
geometric
IL_4V88_405
NA
IL_3JBO_0171/A/417:419,
1/A/426:428		Isolated near basepair
geometric
IL_3NJ7_004
IL_42997.3
IL_3JBO_0181/A/445:447,
1/A/469:470		Single bulged U
geometric
IL_4LFB_014
IL_89505.4
IL_3JBO_2381/A/449:453,
1/A/466:467		C-loop
homologous
IL_8P9A_397
IL_03109.3
IL_3JBO_2391/A/453:454,
1/A/464:466		Single bulged G
homologous
IL_8P9A_398
IL_00225.14
IL_3JBO_2401/A/521:523,
1/A/543:550		No text annotation
homologous
IL_8CRE_418
IL_86136.1
IL_3JBO_0211/A/557:564,
1/A/594:595		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_3JBO_0221/A/564:566,
1/A/593:594		Single bulged U
geometric
IL_7RQB_080
NA
IL_3JBO_0231/A/569:575,
1/A/582:590		Kink-turn related
geometric
IL_4V88_415
NA
IL_3JBO_0241/A/623:629,
1/A/1205:1206		No text annotation
geometric
IL_4V88_416
NA
IL_3JBO_0251/A/631:633,
1/A/1042:1044		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_87907.2
IL_3JBO_0261/A/634:638,
1/A/1037:1041		tSH-tHW-tHS
geometric
IL_4V88_418
NA
IL_3JBO_0271/A/651:653,
1/A/747:749		Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_3JBO_0281/A/757:760,
1/A/787:790		Tandem non-canonical cWW pairs
geometric
IL_4WF9_110
IL_51479.1
IL_3JBO_0291/A/796:797,
1/A/865:868		Minor groove platform
geometric
IL_7RQB_073
NA
IL_3JBO_0301/A/798:800,
1/A/862:864		Isolated non-canonical cWW pair
geometric
IL_4V88_424
NA
IL_3JBO_0311/A/801:809,
1/A/854:861		No text annotation
homologous
IL_8P9A_414
IL_59049.1
IL_3JBO_0321/A/827:835,
1/A/845:846		No text annotation
IL_3JBO_0331/A/878:879,
1/A/923:925		Single bulged A
geometric
IL_8C3A_019
NA
IL_3JBO_0341/A/881:883,
1/A/919:921		Isolated non-canonical cWW pair
geometric
IL_5TBW_008
NA
IL_3JBO_0351/A/883:886,
1/A/916:919		Tandem non-canonical cWW pairs
geometric
IL_402D_001
IL_77658.1
IL_3JBO_0361/A/886:888,
1/A/914:916		Isolated non-canonical cWW contact
geometric
IL_5UNE_009
IL_44465.1
IL_3JBO_0371/A/890:892,
1/A/910:912		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_3JBO_0381/A/933:934,
1/A/1031:1034		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_3JBO_0391/A/936:937,
1/A/1027:1029		Single bulged U
geometric
IL_7KVT_002
IL_89505.4
IL_3JBO_0401/A/939:942,
1/A/1023:1025		Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_87907.2
IL_3JBO_0411/A/943:946,
1/A/1020:1022		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_3JBO_0421/A/955:957,
1/A/993:995		Isolated non-canonical cWW pair
geometric
IL_4V88_472
NA
IL_3JBO_0431/A/962:968,
1/A/979:988		Kink-turn related
homologous
IL_8C3A_440
NA
IL_3JBO_0441/A/1054:1058,
1/A/1084:1085		Left turn
geometric
IL_4LFB_032
IL_29346.2
IL_3JBO_0451/A/1059:1063,
1/A/1079:1083		tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_3JBO_0461/A/1103:1105,
1/A/1196:1202		No text annotation
geometric
IL_4V88_437
NA
IL_3JBO_0471/A/1117:1119,
1/A/1169:1171		Isolated non-canonical cWW pair
geometric
IL_4ZC7_001
IL_87907.2
IL_3JBO_0481/A/1212:1219,
1/A/1230:1235		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4LFB_034
IL_41756.4
IL_3JBO_0491/A/1247:1248,
1/A/1927:1929		Single bulged A
geometric
IL_5TBW_045
NA
IL_3JBO_0501/A/1250:1252,
1/A/1924:1925		Single bulged G
homologous
IL_8C3A_448
NA
IL_3JBO_0511/A/1258:1261,
1/A/1914:1918		C-loop
geometric
IL_4V88_443
NA
IL_3JBO_0521/A/1274:1276,
1/A/1710:1712		Isolated non-canonical cWW pair
geometric
IL_4NGF_002
IL_87907.2
IL_3JBO_0531/A/1279:1280,
1/A/1705:1707		Minor groove platform
geometric
IL_4V88_445
NA
IL_3JBO_0541/A/1369:1371,
1/A/1686:1687		Single bulged U
geometric
IL_5J7L_046
IL_89505.4
IL_3JBO_0551/A/1373:1377,
1/A/1682:1684		Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_3JBO_2241/A/1373:1379,
1/A/1676:1684		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_3JBO_0561/A/1377:1379,
1/A/1676:1682		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_3JBO_0571/A/1381:1382,
1/A/1672:1674		Single bulged A
geometric
IL_4V88_452
NA
IL_3JBO_0581/A/1408:1410,
1/A/1419:1420		Minor groove platform
geometric
IL_5ML7_009
IL_51454.3
IL_3JBO_0591/A/1442:1445,
1/A/1628:1630		Isolated non-canonical cWW pair
geometric
IL_1XJR_003
IL_87907.2
IL_3JBO_0601/A/1447:1450,
1/A/1623:1626		Minor groove platform
geometric
IL_4V88_456
NA
IL_3JBO_0611/A/1635:1637,
1/A/1653:1658		Major groove platform; stack outside cWW
geometric
IL_4V88_458
NA
IL_3JBO_2411/A/1725:1732,
1/A/1816:1825		No text annotation
IL_3JBO_0621/A/1791:1794,
1/A/1805:1808		Tandem non-canonical cWW pairs
geometric
IL_4V88_461
NA
IL_3JBO_0631/A/1837:1842,
1/A/1863:1868		No text annotation
geometric
IL_4V88_462
NA
IL_3JBO_0641/A/1933:1935,
1/A/2056:2059		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_3JBO_0651/A/1935:1938,
1/A/2052:2056		No text annotation
geometric
IL_4V88_464
NA
IL_3JBO_0661/A/1939:1941,
1/A/2049:2051		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_3JBO_0671/A/1941:1943,
1/A/2046:2049		No text annotation
geometric
IL_4ZC7_002
NA
IL_3JBO_0681/A/1947:1949,
1/A/2040:2042		Isolated non-canonical cWW pair
geometric
IL_5ED1_002
IL_87907.2
IL_3JBO_0691/A/1950:1953,
1/A/2036:2039		Double sheared
geometric
IL_4V88_468
NA
IL_3JBO_0701/A/1953:1955,
1/A/2035:2036		Single bulged U
geometric
IL_4V88_469
NA
IL_3JBO_0711/A/1955:1956,
1/A/2033:2035		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_3JBO_0721/A/1957:1959,
1/A/2031:2032		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_3JBO_0731/A/1962:1964,
1/A/2026:2028		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_87907.2
IL_3JBO_0741/A/1966:1969,
1/A/2021:2024		Double sheared
geometric
IL_4V88_471
NA
IL_3JBO_0751/A/1970:1972,
1/A/2018:2020		Isolated non-canonical cWW pair
geometric
IL_4KYY_002
IL_07785.1
IL_3JBO_0761/A/1975:1979,
1/A/2011:2015		Triple sheared
geometric
IL_4V88_474
NA
IL_3JBO_0771/A/1979:1982,
1/A/2008:2011		Tandem non-canonical cWW pairs
geometric
IL_4WF9_109
NA
IL_3JBO_0781/A/1983:1984,
1/A/2005:2007		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_3JBO_0791/AA/13:15,
1/AC/151:152		Single bulged U
homologous
IL_8C3A_003
NA
IL_3JBO_0801/AA/31:38,
1/AA/45:53		tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_3JBO_0811/AA/82:89,
1/AA/97:103		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_3JBO_0821/AA/118:123,
1/AA/158:159		Multiple bulged bases
geometric
IL_5J7L_005
IL_82107.5
IL_3JBO_2261/AA/118:124,
1/AA/153:159		No text annotation
IL_3JBO_0831/AA/123:124,
1/AA/153:158		No text annotation
homologous
IL_5TBW_007
NA
IL_3JBO_0841/AA/126:128,
1/AA/149:151		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_3JBO_0851/AA/130:134,
1/AA/143:147		Triple non-canonical cWW pairs
geometric
IL_8VMB_003
IL_49751.4
IL_3JBO_0861/AA/165:168,
1/AA/263:266		Tandem non-canonical cWW pairs
geometric
IL_5TBW_128
NA
IL_3JBO_0871/AA/173:175,
1/AA/255:258		No text annotation
geometric
IL_4QIK_001
IL_99358.1
IL_3JBO_0881/AA/178:183,
1/AA/248:252		No text annotation
IL_3JBO_0891/AA/186:191,
1/AA/240:245		No text annotation
geometric
IL_6O5F_001
NA
IL_3JBO_2281/AA/186:193,
1/AA/238:245		No text annotation
IL_3JBO_0901/AA/197:199,
1/AA/212:213		Single bulged U
homologous
IL_8C3A_013
NA
IL_3JBO_0911/AA/345:347,
1/AC/29:30		Single bulged A
homologous
IL_5TBW_013
NA
IL_3JBO_0921/AA/385:388,
1/AA/399:413		No text annotation
IL_3JBO_0931/AA/414:420,
1/AC/17:23		Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_04021.2
IL_3JBO_0941/AA/436:438,
1/AA/709:711		Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_87907.2
IL_3JBO_0951/AA/519:522,
1/AA/633:636		Tandem non-canonical cWW pairs
geometric
IL_4UYK_003
IL_77658.1
IL_3JBO_0961/AA/523:525,
1/AA/629:632		No text annotation
IL_3JBO_2421/AA/523:526,
1/AA/629:632		Tandem non-canonical cWW pairs
homologous
IL_8CRE_018
IL_85033.2
IL_3JBO_0971/AA/525:527,
1/AA/628:629		Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_3JBO_0981/AA/529:533,
1/AA/619:626		No text annotation
IL_3JBO_0991/AA/584:586,
1/AA/605:606		Single bulged C
geometric
IL_5F5H_001
IL_61258.15
IL_3JBO_1001/AA/591:594,
1/AA/599:600		Stack outside cWW
geometric
IL_5J7L_268
IL_56987.1
IL_3JBO_1011/AA/658:661,
1/AA/672:675		Tandem non-canonical cWW pairs
geometric
IL_7A0S_040
IL_77658.1
IL_3JBO_1021/AA/743:745,
1/AA/914:916		No text annotation
geometric
IL_4KR9_001
NA
IL_3JBO_1031/AA/758:762,
1/AA/777:794		No text annotation
IL_3JBO_1041/AA/827:833,
1/AA/861:868		No text annotation
IL_3JBO_1051/AA/875:876,
1/AA/898:900		Single bulged A
homologous
IL_8C3A_026
NA
IL_3JBO_2431/AA/880:881,
1/AA/892:894		Minor groove platform
geometric
IL_8P9A_267
IL_51454.3
IL_3JBO_1071/AA/922:924,
1/AA/1057:1059		Isolated non-canonical cWW pair
homologous
IL_5TBW_027
NA
IL_3JBO_1081/AA/924:928,
1/AA/1050:1057		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_3JBO_1091/AA/947:948,
1/AA/1014:1016		Single bulged A
homologous
IL_8C3A_031
NA
IL_3JBO_1101/AA/952:953,
1/AA/978:980		Single bulged G
geometric
IL_7RQB_020
NA
IL_3JBO_1111/AA/953:957,
1/AA/974:978		Triple sheared
homologous
IL_8C3A_033
NA
IL_3JBO_1121/AA/988:991,
1/AA/1007:1009		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_3JBO_1131/AA/992:994,
1/AA/1005:1006		Single bulged U
homologous
IL_5TBW_032
NA
IL_3JBO_1141/AA/1026:1028,
1/AA/1038:1042		Multiple bulged bases
homologous
IL_5TBW_033
NA
IL_3JBO_1151/AA/1088:1089,
1/AA/1239:1241		Single stack bend
homologous
IL_5TBW_035
NA
IL_3JBO_1161/AA/1095:1104,
1/AA/1228:1233		No text annotation
IL_3JBO_1171/AA/1105:1107,
1/AA/1226:1227		Single bulged G
homologous
IL_8C3A_040
NA
IL_3JBO_1181/AA/1113:1119,
1/AA/1175:1181		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_3JBO_1191/AA/1119:1120,
1/AA/1173:1175		Minor groove platform
homologous
IL_8C3A_042
NA
IL_3JBO_1201/AA/1121:1126,
1/AA/1169:1172		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_3JBO_1211/AA/1128:1131,
1/AA/1164:1167		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_77658.1
IL_3JBO_1221/AA/1131:1133,
1/AA/1162:1164		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_3JBO_1231/AA/1135:1139,
1/AA/1158:1160		Isolated non-canonical cWW pair
geometric
IL_6CZR_122
NA
IL_3JBO_1241/AA/1191:1193,
1/AA/1214:1216		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_3JBO_1251/AA/1198:1200,
1/AA/1208:1209		Single bulged A
geometric
IL_7RQB_048
NA
IL_3JBO_1261/AA/1248:1250,
1/AA/1264:1266		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_3JBO_1271/AA/1294:1299,
1/AA/1456:1461		UAA/GAN with extra cWW
geometric
IL_7RQB_107
NA
IL_3JBO_1281/AA/1301:1308,
1/AA/1453:1454		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_3JBO_1291/AA/1308:1310,
1/AA/1452:1453		Single bulged U
geometric
IL_7RQB_038
NA
IL_3JBO_1301/AA/1315:1322,
1/AA/1442:1447		No text annotation
geometric
IL_5TBW_051
NA
IL_3JBO_1311/AA/1322:1333,
1/AA/1427:1442		No text annotation
geometric
IL_5TBW_052
NA
IL_3JBO_1321/AA/1335:1337,
1/AA/1424:1425		Single bulged U
homologous
IL_5TBW_053
NA
IL_3JBO_1331/AA/1475:1481,
1/AA/1499:1506		No text annotation
IL_3JBO_1341/AA/1525:1527,
1/AA/1577:1580		No text annotation
homologous
IL_8C3A_061
NA
IL_3JBO_1351/AA/1530:1534,
1/AA/1569:1574		No text annotation
IL_3JBO_1361/AA/1536:1543,
1/AA/1563:1567		Kink-turn
homologous
IL_8C3A_063
NA
IL_3JBO_1371/AA/1548:1550,
1/AA/1557:1558		Single bulged U
geometric
IL_5TBW_025
NA
IL_3JBO_1381/AA/1593:1599,
1/AA/2647:2652		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_3JBO_1391/AA/1649:1654,
1/AA/1662:1665		No text annotation
geometric
IL_5TBW_062
NA
IL_3JBO_1401/AA/1681:1685,
1/AA/1728:1733		UAA/GAN
homologous
IL_5TBW_063
NA
IL_3JBO_1411/AA/1759:1762,
1/AA/2090:2095		No text annotation
IL_3JBO_1421/AA/1768:1770,
1/AA/2082:2084		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_28037.2
IL_3JBO_1431/AA/1800:1804,
1/AA/2028:2032		Triple sheared
homologous
IL_8C3A_073
NA
IL_3JBO_1441/AA/1816:1818,
1/AA/2008:2010		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_3JBO_1451/AA/1823:1824,
1/AA/2001:2003		Major groove platform
geometric
IL_7RQB_078
NA
IL_3JBO_1461/AA/1826:1829,
1/AA/1996:1999		Tandem non-canonical cWW pairs
geometric
IL_4WF9_109
NA
IL_3JBO_1471/AA/1849:1853,
1/AA/1967:1972		No text annotation
homologous
IL_8C3A_077
NA
IL_3JBO_1481/AA/1861:1863,
1/AA/1895:1897		Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_87907.2
IL_3JBO_1491/AA/1868:1874,
1/AA/1884:1890		Kink-turn
homologous
IL_5TBW_073
NA
IL_3JBO_1501/AA/1907:1910,
1/AA/1959:1962		Tandem non-canonical cWW pairs
geometric
IL_7A0S_040
IL_77658.1
IL_3JBO_1511/AA/1973:1976,
1/AA/1992:1995		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_3JBO_1521/AA/1976:1978,
1/AA/1990:1992		Isolated non-canonical cWW pair
geometric
IL_4E48_005
IL_87907.2
IL_3JBO_1531/AA/2036:2040,
1/AA/2069:2073		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
IL_17948.2
IL_3JBO_1541/AA/2151:2156,
1/AA/2640:2642		No text annotation
geometric
IL_7RQB_064
NA
IL_3JBO_1551/AA/2163:2165,
1/AA/2631:2633		Isolated tWW turn
homologous
IL_5TBW_075
NA
IL_3JBO_1561/AA/2166:2169,
1/AA/2629:2630		Major groove platform; stack outside cWW
homologous
IL_5TBW_076
NA
IL_3JBO_2331/AA/2166:2174,
1/AA/2626:2630		No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_3JBO_1571/AA/2169:2174,
1/AA/2626:2629		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_3JBO_1581/AA/2186:2191,
1/AA/2196:2202		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_47346.2
IL_3JBO_1591/AA/2208:2210,
1/AA/2399:2401		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_3JBO_1601/AA/2215:2216,
1/AA/2391:2394		No text annotation
homologous
IL_8C3A_086
NA
IL_3JBO_1611/AA/2421:2422,
1/AA/2616:2618		Single bulged A
homologous
IL_5TBW_082
NA
IL_3JBO_1621/AA/2449:2455,
1/AA/2466:2473		Kink-turn related
homologous
IL_5TBW_083
NA
IL_3JBO_1631/AA/2489:2492,
1/AA/2538:2539		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_3JBO_1641/AA/2493:2494,
1/AA/2534:2537		Major groove intercalation
homologous
IL_5TBW_085
NA
IL_3JBO_1651/AA/2497:2499,
1/AA/2530:2531		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_3JBO_1661/AA/2499:2503,
1/AA/2528:2530		No text annotation
homologous
IL_8C3A_092
NA
IL_3JBO_1671/AA/2504:2509,
1/AA/2522:2527		No text annotation
IL_3JBO_1681/AA/2569:2570,
1/AA/2600:2603		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_3JBO_1691/AA/2570:2581,
1/AA/2597:2600		No text annotation
homologous
IL_5TBW_090
NA
IL_3JBO_1701/AA/2684:2687,
1/AA/3345:3347		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_3JBO_1711/AA/2689:2691,
1/AA/3340:3343		No text annotation
homologous
IL_8C3A_097
NA
IL_3JBO_1721/AA/2702:2704,
1/AA/3170:3171		Single bulged U
homologous
IL_8C3A_098
NA
IL_3JBO_1731/AA/2705:2706,
1/AA/3166:3169		Minor groove platform
homologous
IL_8C3A_099
NA
IL_3JBO_1741/AA/2716:2718,
1/AA/2943:2946		No text annotation
homologous
IL_8C3A_100
NA
IL_3JBO_1751/AA/2738:2739,
1/AA/2809:2811		Stack outside cWW
geometric
IL_6JQ6_004
IL_66635.5
IL_3JBO_1761/AA/2744:2747,
1/AA/2801:2804		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_3JBO_1771/AA/2953:2954,
1/AA/2964:2966		Single bulged A
homologous
IL_5TBW_098
NA
IL_3JBO_1781/AA/3005:3007,
1/AA/3025:3029		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_3JBO_2351/AA/3110:3113,
1/AA/3145:3146		No text annotation
IL_3JBO_1801/AA/3115:3124,
1/AA/3136:3143		No text annotation
IL_3JBO_1811/AA/3182:3183,
1/AA/3224:3226		Major groove platform
geometric
IL_1I6U_001
IL_48076.6
IL_3JBO_1821/AA/3183:3185,
1/AA/3222:3224		Isolated non-canonical cWW pair
homologous
IL_5TBW_103
NA
IL_3JBO_1831/AA/3185:3187,
1/AA/3221:3222		Major groove platform
geometric
IL_5TBW_104
NA
IL_3JBO_1841/AA/3187:3189,
1/AA/3217:3221		Major groove minor groove platform with extra cWW
geometric
IL_4V9F_084
IL_51387.3
IL_3JBO_1851/AA/3194:3198,
1/AA/3208:3212		No text annotation
homologous
IL_8C3A_114
NA
IL_3JBO_1861/AA/3235:3236,
1/AA/3308:3310		Major groove platform
homologous
IL_5TBW_107
NA
IL_3JBO_1871/AA/3238:3240,
1/AA/3302:3306		Isolated non-canonical cWW with bulges
homologous
IL_5TBW_108
NA
IL_3JBO_1881/AA/3240:3241,
1/AA/3299:3302		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_3JBO_1891/AA/3250:3251,
1/AA/3268:3271		Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_3JBO_1901/AA/3277:3279,
1/AA/3285:3287		Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_3JBO_1911/AA/3319:3320,
1/AA/3329:3331		Single bulged A
homologous
IL_5TBW_113
NA
IL_3JBO_1921/AA/3360:3363,
1/AA/3375:3379		No text annotation
IL_3JBO_1931/AA/3390:3393,
1/AA/3524:3530		Double sheared
homologous
IL_8C3A_123
NA
IL_3JBO_1941/AA/3398:3400,
1/AA/3426:3428		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_3JBO_1951/AA/3405:3411,
1/AA/3416:3421		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.4
IL_3JBO_1961/AA/3433:3437,
1/AA/3476:3478		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_3JBO_1971/AA/3440:3444,
1/AA/3469:3473		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_3JBO_1981/AA/3448:3449,
1/AA/3462:3465		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_3JBO_1991/AA/3486:3491,
1/AA/3512:3517		UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_3JBO_2001/AA/3554:3573,
1/AA/3674:3675		Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_3JBO_2011/AA/3580:3582,
1/AA/3620:3621		Single bulged A
geometric
IL_7A0S_012
IL_31462.7
IL_3JBO_2021/AA/3583:3591,
1/AA/3614:3619		No text annotation
IL_3JBO_2361/AA/3583:3592,
1/AA/3612:3619		No text annotation
IL_3JBO_2031/AA/3591:3592,
1/AA/3612:3614		Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_3JBO_2041/AA/3629:3632,
1/AA/3653:3656		Tandem non-canonical cWW pairs
geometric
IL_1L9A_002
NA
IL_3JBO_2051/AA/3636:3641,
1/AA/3644:3649		No text annotation
geometric
IL_5TBW_476
NA
IL_3JBO_2061/AA/3694:3697,
1/AA/3705:3708		Tandem non-canonical cWW pairs
geometric
IL_1D4R_003
IL_85033.2
IL_3JBO_2071/AA/3714:3716,
1/AA/3775:3777		Isolated non-canonical cWW pair
geometric
IL_7A0S_011
IL_07785.1
IL_3JBO_2081/AA/3716:3717,
1/AA/3773:3775		Single bulged A
geometric
IL_5TBW_123
NA
IL_3JBO_2091/AA/3720:3722,
1/AA/3765:3770		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_3JBO_2101/AA/3724:3729,
1/AA/3759:3763		No text annotation
homologous
IL_5TBW_133
NA
IL_3JBO_2111/AA/3731:3733,
1/AA/3756:3757		Single bulged U
geometric
IL_4FRG_002
IL_89505.4
IL_3JBO_2121/AA/3734:3737,
1/AA/3752:3755		Double sheared; A in syn
homologous
IL_5TBW_135
NA
IL_3JBO_2131/AB/15:16,
1/AB/62:64		Single bulged A
geometric
IL_5TBW_372
NA
IL_3JBO_2141/AB/21:26,
1/AB/56:57		No text annotation
IL_3JBO_2441/AB/21:27,
1/AB/52:57		No text annotation
IL_3JBO_2151/AB/26:27,
1/AB/52:56		No text annotation
IL_3JBO_2161/AB/28:29,
1/AB/48:51		Major groove minor groove platform; mini C-loop
geometric
IL_7RQB_113
NA
IL_3JBO_2171/AB/32:36,
1/AB/41:45		Symmetric double minor groove platform
geometric
IL_4V9F_104
IL_58103.11
IL_3JBO_2181/AB/71:78,
1/AB/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_04346.10
IL_3JBO_2191/AB/82:85,
1/AB/92:94		Isolated cWH basepair
geometric
IL_3W3S_003
IL_10167.6
IL_3JBO_2201/AC/48:68,
1/AC/99:103		No text annotation
geometric
IL_5TBW_144
NA
IL_3JBO_2211/AC/68:70,
1/AC/96:99		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_3JBO_2221/AC/73:76,
1/AC/83:93		No text annotation
IL_3JBO_2231/AC/122:123,
1/AC/138:141		No text annotation

Problematic loops

#loop idProblemSequence
IL_3JBO_019C-loop with extra cWW pair
IL_3JBO_020No text annotation
IL_3JBO_225No text annotation
IL_3JBO_227No text annotation
IL_3JBO_229Isolated cWH basepair
IL_3JBO_230Tandem non-canonical cWW pairs
IL_3JBO_231Triple non-canonical cWW pairs
IL_3JBO_106Minor groove platform with extra cWW
IL_3JBO_232Tandem non-canonical cWW pairs
IL_3JBO_234Isolated non-canonical cWW with bulges
IL_3JBO_179Isolated non-canonical cWW pair
IL_3JBO_237No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3JBO_0011/A/41:42,
1/A/439:445,
1/A/470:472		No text annotation
geometric
J3_4V88_078
NA
J3_3JBO_0351/A/41:48,
1/A/437:445,
1/A/470:472		No text annotation
homologous
J3_8C3A_083
NA
J3_3JBO_0021/A/640:642,
1/A/929:933,
1/A/1034:1035		No text annotation
geometric
J3_4V88_080
NA
J3_3JBO_0361/A/640:642,
1/A/929:934,
1/A/1031:1035		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_3JBO_0031/A/810:813,
1/A/823:825,
1/A/848:853		No text annotation
homologous
J3_8C3A_035
NA
J3_3JBO_0041/A/950:953,
1/A/997:1005,
1/A/1012:1016		No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_3JBO_0051/A/1106:1108,
1/A/1180:1184,
1/A/1191:1195		No text annotation
J3_3JBO_0061/A/1262:1265,
1/A/1878:1884,
1/A/1906:1913		No text annotation
homologous
J3_8C3A_038
NA
J3_3JBO_0071/A/1269:1272,
1/A/1714:1716,
1/A/1871:1874		No text annotation
homologous
J3_8C3A_039
NA
J3_3JBO_0081/A/1281:1288,
1/A/1299:1310,
1/A/1700:1704		No text annotation
homologous
J3_8P9A_078
J3_83516.4
J3_3JBO_0091/A/1316:1321,
1/A/1364:1368,
1/A/1688:1694		No text annotation
homologous
J3_8C3A_041
NA
J3_3JBO_0101/A/1384:1389,
1/A/1429:1434,
1/A/1665:1670		No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_3JBO_0111/A/1394:1395,
1/A/1405:1408,
1/A/1420:1424		No text annotation
homologous
J3_8P9A_081
J3_76043.3
J3_3JBO_0121/A/1438:1440,
1/A/1632:1635,
1/A/1658:1661		No text annotation
homologous
J3_8C3A_043
NA
J3_3JBO_0371/A/1438:1440,
1/A/1632:1637,
1/A/1653:1661		No text annotation
homologous
J3_8C3A_086
NA
J3_3JBO_0131/A/1716:1720,
1/A/1830:1837,
1/A/1868:1871		No text annotation
homologous
J3_8C3A_044
NA
J3_3JBO_0381/A/1734:1745,
1/A/1784:1790,
1/A/1809:1814		No text annotation
J3_3JBO_0141/AA/113:117,
1/AA/160:163,
1/AA/268:274		No text annotation
J3_3JBO_0391/AA/193:197,
1/AA/213:222,
1/AA/234:238		No text annotation
geometric
J3_8VTW_041
NA
J3_3JBO_0401/AA/348:364,
1/AA/371:376,
1/AC/25:28		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_3JBO_0151/AA/377:385,
1/AA/413:414,
1/AC/23:24		No text annotation
homologous
J3_5TBW_002
NA
J3_3JBO_0411/AA/377:388,
1/AA/399:414,
1/AC/23:24		No text annotation
J3_3JBO_0161/AA/446:454,
1/AA/501:506,
1/AA/692:701		No text annotation
J3_3JBO_0421/AA/446:455,
1/AA/500:506,
1/AA/692:701		No text annotation
J3_3JBO_0171/AA/512:514,
1/AA/641:653,
1/AA/680:686		No text annotation
J3_3JBO_0181/AA/540:548,
1/AA/580:582,
1/AA/608:612		No text annotation
J3_3JBO_0431/AA/540:548,
1/AA/580:586,
1/AA/605:612		No text annotation
J3_3JBO_0191/AA/933:939,
1/AA/1024:1026,
1/AA/1042:1045		No text annotation
homologous
J3_8C3A_003
NA
J3_3JBO_0201/AA/948:950,
1/AA/982:987,
1/AA/1010:1014		No text annotation
J3_3JBO_0211/AA/1108:1109,
1/AA/1185:1189,
1/AA/1218:1225		No text annotation
J3_3JBO_0221/AA/1633:1634,
1/AA/2124:2126,
1/AA/2138:2145		No text annotation
J3_3JBO_0231/AA/1637:1640,
1/AA/2104:2110,
1/AA/2119:2121		No text annotation
homologous
J3_5TBW_009
NA
J3_3JBO_0241/AA/1675:1680,
1/AA/1734:1738,
1/AA/1755:1756		No text annotation
homologous
J3_5TBW_010
NA
J3_3JBO_0251/AA/1688:1691,
1/AA/1700:1710,
1/AA/1723:1725		No text annotation
J3_3JBO_0261/AA/1773:1780,
1/AA/2033:2034,
1/AA/2075:2079		No text annotation
J3_3JBO_0271/AA/1780:1781,
1/AA/1790:1800,
1/AA/2032:2033		No text annotation
J3_3JBO_0441/AA/1809:1813,
1/AA/2013:2014,
1/AA/2018:2023		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_3JBO_0281/AA/1854:1860,
1/AA/1898:1905,
1/AA/1964:1966		No text annotation
J3_3JBO_0291/AA/2725:2728,
1/AA/2821:2825,
1/AA/2930:2936		No text annotation
geometric
J3_4V9F_007
J3_97609.1
J3_3JBO_0301/AA/2990:2992,
1/AA/3093:3104,
1/AA/3152:3157		No text annotation
homologous
J3_8C3A_056
NA
J3_3JBO_0311/AA/3003:3005,
1/AA/3029:3031,
1/AA/3040:3045		No text annotation
homologous
J3_8C3A_010
NA
J3_3JBO_0321/AA/3245:3248,
1/AA/3273:3275,
1/AA/3289:3295		No text annotation
homologous
J3_5TBW_014
NA
J3_3JBO_0451/AA/3575:3580,
1/AA/3621:3627,
1/AA/3658:3672		No text annotation
J3_3JBO_0331/AA/3691:3693,
1/AA/3709:3712,
1/AA/3779:3783		No text annotation
J3_3JBO_0341/AB/9:14,
1/AB/65:66,
1/AB/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_3JBO_0461/AC/48:49,
1/AC/62:68,
1/AC/99:103		No text annotation
homologous
J3_8C3A_060
NA
J4_3JBO_0011/7/7:10,
1/7/25:28,
1/7/42:49,
1/7/65:66		tRNA junction
homologous
J4_4V90_004
J4_94519.1
J4_3JBO_0021/A/101:109,
1/A/313:315,
1/A/363:367,
1/A/389:390		No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_3JBO_0031/A/629:631,
1/A/1044:1049,
1/A/1090:1101,
1/A/1204:1205		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J4_3JBO_0041/AA/112:113,
1/AA/274:279,
1/AA/300:307,
1/AA/324:327		No text annotation
J4_3JBO_0051/AA/193:197,
1/AA/213:216,
1/AA/220:222,
1/AA/234:238		No text annotation
J4_3JBO_0061/AA/1600:1606,
1/AA/1624:1633,
1/AA/2145:2148,
1/AA/2645:2646		No text annotation
J4_3JBO_0071/AA/1641:1645,
1/AA/1669:1674,
1/AA/1757:1758,
1/AA/2096:2103		No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_3JBO_0081/AA/1829:1830,
1/AA/1848:1849,
1/AA/1972:1976,
1/AA/1992:1996		No text annotation
J4_3JBO_0091/AA/2423:2427,
1/AA/2439:2443,
1/AA/2479:2483,
1/AA/2610:2615		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_3JBO_0101/AA/2485:2487,
1/AA/2541:2542,
1/AA/2560:2569,
1/AA/2603:2608		No text annotation
homologous
J4_8C3A_007
NA
J4_3JBO_0111/AA/2993:2997,
1/AA/3051:3055,
1/AA/3079:3081,
1/AA/3090:3092		No text annotation
homologous
J4_8C3A_008
NA
J4_3JBO_0121/AA/3396:3398,
1/AA/3428:3429,
1/AA/3482:3484,
1/AA/3519:3521		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J5_3JBO_0011/A/31:35,
1/A/479:485,
1/A/516:521,
1/A/550:553,
1/A/599:602		No text annotation
homologous
J5_8C3A_018
NA
J5_3JBO_0141/A/31:35,
1/A/479:485,
1/A/516:523,
1/A/543:553,
1/A/599:602		No text annotation
J5_3JBO_0031/A/54:57,
1/A/92:99,
1/A/392:394,
1/A/415:417,
1/A/428:432		No text annotation
homologous
J5_8C3A_020
NA
J5_3JBO_0041/A/126:140,
1/A/171:179,
1/A/206:210,
1/A/260:266,
1/A/295:299		No text annotation
J5_3JBO_0051/A/126:140,
1/A/171:179,
1/A/206:210,
1/A/260:268,
1/A/294:299		No text annotation
J5_3JBO_0151/A/643:648,
1/A/752:755,
1/A/792:793,
1/A/871:877,
1/A/926:928		No text annotation
J5_3JBO_0071/AA/20:22,
1/AC/39:46,
1/AC/105:110,
1/AC/118:119,
1/AC/144:146		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_3JBO_0081/AA/736:741,
1/AA/918:921,
1/AA/1060:1063,
1/AA/1524:1525,
1/AA/1580:1586		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_3JBO_0091/AA/753:756,
1/AA/796:800,
1/AA/807:823,
1/AA/872:873,
1/AA/902:906		No text annotation
J5_3JBO_0101/AA/1600:1606,
1/AA/1624:1634,
1/AA/2124:2126,
1/AA/2138:2148,
1/AA/2645:2646		No text annotation
J5_3JBO_0111/AA/2174:2182,
1/AA/2206:2207,
1/AA/2402:2403,
1/AA/2407:2415,
1/AA/2624:2626		No text annotation
homologous
J5_8C3A_004
NA
J5_3JBO_0121/AA/2692:2699,
1/AA/3174:3182,
1/AA/3226:3235,
1/AA/3310:3316,
1/AA/3334:3339		No text annotation
J5_3JBO_0131/AA/2709:2712,
1/AA/2950:2953,
1/AA/2966:2967,
1/AA/2989:2990,
1/AA/3157:3163		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_3JBO_0011/AA/23:28,
1/AA/56:68,
1/AA/75:79,
1/AA/106:110,
1/AA/329:338,
1/AC/37:38		No text annotation
J6_3JBO_0021/AA/2709:2712,
1/AA/2950:2953,
1/AA/2966:2967,
1/AA/2989:2992,
1/AA/3093:3104,
1/AA/3152:3163		No text annotation
J7_3JBO_0011/AA/1068:1074,
1/AA/1085:1087,
1/AA/1242:1245,
1/AA/1269:1274,
1/AA/1285:1289,
1/AA/1466:1467,
1/AA/1514:1519		No text annotation

Problematic loops

#loop idProblemSequence
J5_3JBO_002No text annotation
J5_3JBO_006No text annotation

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