HL_3JBO_014

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UAAAGAA

Length

7 nucleotides

Bulged bases

3JBO|1|A|A|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_014 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1993

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

3JBO|1|A|U|456
3JBO|1|A|A|457
3JBO|1|A|A|458
3JBO|1|A|A|459
3JBO|1|A|G|460
3JBO|1|A|A|461
3JBO|1|A|A|462

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein eS24

Chain F

40S ribosomal protein eS4