HL_3JBO_023

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_023 not in the Motif Atlas

Geometric match to HL_4V88_207

Geometric discrepancy: 0.1067

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JBO|1|A|C|1006
3JBO|1|A|G|1007
3JBO|1|A|A|1008
3JBO|1|A|A|1009
3JBO|1|A|A|1010
3JBO|1|A|G|1011

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein eS26

Chain U

40S ribosomal protein uS15