HL_3JBO_027

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

3JBO|1|A|A|1297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_027 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.15

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JBO|1|A|G|1289
3JBO|1|A|A|1290
3JBO|1|A|C|1291
3JBO|1|A|U|1292
3JBO|1|A|C|1293
3JBO|1|A|A|1294
3JBO|1|A|A|1295
3JBO|1|A|C|1296
3JBO|1|A|A|1297
3JBO|1|A|C|1298

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain M

40S ribosomal protein uS9

Chain N

40S ribosomal protein uS10