HL_3JBO_036
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UUCAUCAGA
- Length
- 9 nucleotides
- Bulged bases
- 3JBO|1|A|C|1893, 3JBO|1|A|G|1898
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_036 not in the Motif Atlas
- Geometric match to HL_4V88_220
- Geometric discrepancy: 0.2973
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JBO|1|A|U|1891
3JBO|1|A|U|1892
3JBO|1|A|C|1893
3JBO|1|A|A|1894
3JBO|1|A|U|1895
3JBO|1|A|C|1896
3JBO|1|A|A|1897
3JBO|1|A|G|1898
3JBO|1|A|A|1899
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein uS3
- Chain M
- 40S ribosomal protein uS9
- Chain N
- 40S ribosomal protein uS10
- Chain T
- 40S ribosomal protein uS14
- Chain X
- 40S ribosomal protein uS19
- Chain Y
- 40S ribosomal protein eS19
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