HL_3JBO_043

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAGGAAUG

Length

8 nucleotides

Bulged bases

3JBO|1|AA|U|208

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_043 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4226

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

3JBO|1|AA|C|202
3JBO|1|AA|A|203
3JBO|1|AA|G|204
3JBO|1|AA|G|205
3JBO|1|AA|A|206
3JBO|1|AA|A|207
3JBO|1|AA|U|208
3JBO|1|AA|G|209

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein eL32

Chain AF

60S ribosomal protein uL4

Chain AZ

60S ribosomal protein uL24