HL_3JBO_047
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAUACAUUUC
- Length
- 10 nucleotides
- Bulged bases
- 3JBO|1|AA|A|312, 3JBO|1|AA|U|313
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_047 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.2321
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
3JBO|1|AA|G|311
3JBO|1|AA|A|312
3JBO|1|AA|U|313
3JBO|1|AA|A|314
3JBO|1|AA|C|315
3JBO|1|AA|A|316
3JBO|1|AA|U|317
3JBO|1|AA|U|318
3JBO|1|AA|U|319
3JBO|1|AA|C|320
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein eL13
- Chain AO
- 60S ribosomal protein uL15
- Chain AP
- 60S ribosomal protein eL15
- Chain Ab
- 60S ribosomal protein eL36
- Chain Ai
- 60S ribosomal protein eL44
Coloring options: