HL_3JBO_063

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

3JBO|1|AA|G|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_063 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.1398

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JBO|1|AA|G|1254
3JBO|1|AA|G|1255
3JBO|1|AA|U|1256
3JBO|1|AA|A|1257
3JBO|1|AA|A|1258
3JBO|1|AA|G|1259
3JBO|1|AA|C|1260

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein uL16