HL_3JBO_069

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_069 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.3905

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JBO|1|AA|U|1693
3JBO|1|AA|G|1694
3JBO|1|AA|A|1695
3JBO|1|AA|A|1696
3JBO|1|AA|A|1697
3JBO|1|AA|A|1698

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein eL15

Chain Ac

60S ribosomal protein eL37