HL_3JBO_075

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AAAAUU

Length

6 nucleotides

Bulged bases

3JBO|1|AA|A|1915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_075 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2417

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3JBO|1|AA|A|1912
3JBO|1|AA|A|1913
3JBO|1|AA|A|1914
3JBO|1|AA|A|1915
3JBO|1|AA|U|1956
3JBO|1|AA|U|1957

Current chains

Chain AA

28S ribosomal RNA

Nearby chains