HL_3JBO_077

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

3JBO|1|AA|C|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_077 not in the Motif Atlas

Homologous match to HL_8P9A_151

Geometric discrepancy: 0.2038

The information below is about HL_8P9A_151

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

3JBO|1|AA|C|2014
3JBO|1|AA|C|2015
3JBO|1|AA|U|2016
3JBO|1|AA|U|2017
3JBO|1|AA|G|2018

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain Ah

60S ribosomal protein eL43