HL_3JBO_085

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AUGAAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_085 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2512

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JBO|1|AA|A|2512
3JBO|1|AA|U|2513
3JBO|1|AA|G|2514
3JBO|1|AA|A|2515
3JBO|1|AA|A|2516
3JBO|1|AA|A|2517
3JBO|1|AA|U|2518
3JBO|1|AA|U|2519

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ab

60S ribosomal protein eL36

Chain Ai

60S ribosomal protein eL44