HL_3JBO_088
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 3JBO|1|AA|A|2665, 3JBO|1|AA|A|2666, 3JBO|1|AA|C|2667
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_088 not in the Motif Atlas
- Homologous match to HL_8C3A_051
- Geometric discrepancy: 0.1442
- The information below is about HL_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JBO|1|AA|G|2662
3JBO|1|AA|G|2663
3JBO|1|AA|G|2664
3JBO|1|AA|A|2665
3JBO|1|AA|A|2666
3JBO|1|AA|C|2667
3JBO|1|AA|G|2668
3JBO|1|AA|G|2669
3JBO|1|AA|G|2670
3JBO|1|AA|C|2671
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A8
- 60S ribosomal protein eL32
- Chain AE
- 60S ribosomal protein uL3
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