HL_3JBO_090

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3JBO|1|AA|G|2957

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_090 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1761

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

3JBO|1|AA|C|2955
3JBO|1|AA|U|2956
3JBO|1|AA|G|2957
3JBO|1|AA|G|2958
3JBO|1|AA|G|2959
3JBO|1|AA|G|2960
3JBO|1|AA|C|2961
3JBO|1|AA|G|2962
3JBO|1|AA|G|2963

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain AQ

60S ribosomal protein uL16