HL_3JBO_093
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_093 not in the Motif Atlas
- Homologous match to HL_5TBW_057
- Geometric discrepancy: 0.2738
- The information below is about HL_5TBW_057
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
3JBO|1|AA|U|3032
3JBO|1|AA|A|3033
3JBO|1|AA|A|3034
3JBO|1|AA|A|3035
3JBO|1|AA|A|3036
3JBO|1|AA|G|3037
3JBO|1|AA|G|3038
3JBO|1|AA|G|3039
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AQ
- 60S ribosomal protein uL16
- Chain AV
- 60S ribosomal protein eL21
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