3D structure

PDB id
3JBO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
5.8 Å

Loop

Sequence
UAAAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JBO_093 not in the Motif Atlas
Homologous match to HL_5TBW_057
Geometric discrepancy: 0.2738
The information below is about HL_5TBW_057
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

3JBO|1|AA|U|3032
3JBO|1|AA|A|3033
3JBO|1|AA|A|3034
3JBO|1|AA|A|3035
3JBO|1|AA|A|3036
3JBO|1|AA|G|3037
3JBO|1|AA|G|3038
3JBO|1|AA|G|3039

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AQ
60S ribosomal protein uL16
Chain AV
60S ribosomal protein eL21

Coloring options:


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