HL_3JBO_095

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_095 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.223

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JBO|1|AA|U|3083
3JBO|1|AA|G|3084
3JBO|1|AA|A|3085
3JBO|1|AA|A|3086
3JBO|1|AA|A|3087
3JBO|1|AA|G|3088

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein uL18

Chain AV

60S ribosomal protein eL21

Chain Ai

60S ribosomal protein eL44