HL_3JBO_104

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

3JBO|1|AA|U|3698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_104 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.12

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

3JBO|1|AA|G|3697
3JBO|1|AA|U|3698
3JBO|1|AA|A|3699
3JBO|1|AA|G|3700
3JBO|1|AA|A|3701
3JBO|1|AA|C|3702
3JBO|1|AA|G|3703
3JBO|1|AA|A|3704
3JBO|1|AA|C|3705

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein eL31

Chain AE

60S ribosomal protein uL3

Chain AW

60S ribosomal protein uL22