HL_3JBP_003

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UGAGUUCGA

Length

9 nucleotides

Bulged bases

3JBP|1|7|A|53

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_003 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1754

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3JBP|1|7|U|51
3JBP|1|7|G|52
3JBP|1|7|A|53
3JBP|1|7|G|54
3JBP|1|7|U|55
3JBP|1|7|U|56
3JBP|1|7|C|57
3JBP|1|7|G|58
3JBP|1|7|A|59

Current chains

Chain 7

E-tRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA