3JBP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JBP_004 | 1/A/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_3JBP_006 | 1/A/152:158 | GNRA with GA tSW pair | geometric HL_6MJ0_008 NA | |
| HL_3JBP_007 | 1/A/184:201 | No text annotation | ||
| HL_3JBP_008 | 1/A/245:252 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_3JBP_009 | 1/A/272:291 | Mini UNCG | homologous HL_8C3A_198 NA | |
| HL_3JBP_010 | 1/A/336:344 | GNRA related | geometric HL_4V88_193 NA | |
| HL_3JBP_011 | 1/A/374:379 | No text annotation | geometric HL_4V88_194 NA | |
| HL_3JBP_012 | 1/A/399:410 | No text annotation | geometric HL_4V88_195 NA | |
| HL_3JBP_013 | 1/A/420:425 | UNCG | geometric HL_5Y85_004 HL_61337.3 | |
| HL_3JBP_014 | 1/A/456:462 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_3JBP_020 | 1/A/814:822 | No text annotation | geometric HL_4V88_203 NA | |
| HL_3JBP_022 | 1/A/892:910 | No text annotation | ||
| HL_3JBP_023 | 1/A/969:978 | No text annotation | geometric HL_4LFB_015 HL_38491.2 | |
| HL_3JBP_024 | 1/A/1006:1011 | GNRA | geometric HL_4V88_207 NA | |
| HL_3JBP_025 | 1/A/1066:1076 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_3JBP_026 | 1/A/1185:1190 | GNRA | geometric HL_6JQ5_004 HL_34789.4 | |
| HL_3JBP_027 | 1/A/1222:1227 | GNRA | geometric HL_4V9F_048 HL_34789.4 | |
| HL_3JBP_028 | 1/A/1289:1298 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_3JBP_030 | 1/A/1397:1403 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_3JBP_032 | 1/A/1461:1602 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_3JBP_034 | 1/A/1749:1780 | No text annotation | ||
| HL_3JBP_036 | 1/A/1847:1858 | No text annotation | geometric HL_4V88_219 NA | |
| HL_3JBP_039 | 1/A/2070:2075 | GNRA variation | geometric HL_4V88_222 NA | |
| HL_3JBP_040 | 1/AA/38:45 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_3JBP_042 | 1/AA/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_3JBP_043 | 1/AA/135:142 | No text annotation | ||
| HL_3JBP_045 | 1/AA/216:220 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_3JBP_046 | 1/AA/224:232 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_3JBP_047 | 1/AA/285:294 | T-loop related | homologous HL_8P9A_120 HL_63894.2 | |
| HL_3JBP_048 | 1/AA/311:320 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_3JBP_049 | 1/AA/365:370 | GNRA | homologous HL_5TBW_010 NA | |
| HL_3JBP_050 | 1/AA/391:396 | GNRA | homologous HL_5TBW_011 NA | |
| HL_3JBP_051 | 1/AA/465:490 | No text annotation | ||
| HL_3JBP_052 | 1/AA/552:576 | Purine riboswitch | geometric HL_4LX6_002 HL_46333.1 | |
| HL_3JBP_116 | 1/AA/591:600 | No text annotation | ||
| HL_3JBP_053 | 1/AA/594:599 | No text annotation | ||
| HL_3JBP_054 | 1/AA/663:670 | UNCG variation | geometric HL_5J7L_200 NA | |
| HL_3JBP_055 | 1/AA/718:727 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_3JBP_056 | 1/AA/764:775 | No text annotation | homologous HL_5TBW_015 NA | |
| HL_3JBP_057 | 1/AA/801:806 | GNRA | homologous HL_8C3A_016 NA | |
| HL_3JBP_058 | 1/AA/833:861 | No text annotation | ||
| HL_3JBP_059 | 1/AA/883:890 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_3JBP_060 | 1/AA/963:968 | GNRA | homologous HL_8C3A_019 NA | |
| HL_3JBP_061 | 1/AA/995:1004 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_3JBP_062 | 1/AA/1029:1037 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_3JBP_063 | 1/AA/1077:1082 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_3JBP_066 | 1/AA/1254:1260 | GNRA | homologous HL_8C3A_025 NA | |
| HL_3JBP_067 | 1/AA/1276:1283 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_3JBP_071 | 1/AA/1611:1619 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_3JBP_117 | 1/AA/1654:1662 | No text annotation | ||
| HL_3JBP_073 | 1/AA/1693:1698 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_3JBP_074 | 1/AA/1713:1720 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_3JBP_075 | 1/AA/1742:1751 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_3JBP_077 | 1/AA/1835:1843 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_3JBP_078 | 1/AA/1876:1882 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_3JBP_079 | 1/AA/1912:1957 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_3JBP_081 | 1/AA/2014:2018 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_3JBP_082 | 1/AA/2111:2118 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_3JBP_083 | 1/AA/2129:2135 | GNRA | homologous HL_8C3A_042 NA | |
| HL_3JBP_084 | 1/AA/2191:2196 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_3JBP_122 | 1/AA/2220:2387 | No text annotation | ||
| HL_3JBP_086 | 1/AA/2403:2407 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_3JBP_087 | 1/AA/2428:2438 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_3JBP_088 | 1/AA/2458:2463 | GNRA | homologous HL_8C3A_047 NA | |
| HL_3JBP_089 | 1/AA/2512:2519 | GNRA with extra cWW | geometric HL_7A0S_056 HL_87268.2 | |
| HL_3JBP_090 | 1/AA/2546:2556 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_3JBP_091 | 1/AA/2585:2593 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_3JBP_092 | 1/AA/2662:2671 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_3JBP_093 | 1/AA/2838:2915 | No text annotation | ||
| HL_3JBP_094 | 1/AA/2955:2963 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_3JBP_095 | 1/AA/2972:2984 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_3JBP_096 | 1/AA/3012:3020 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_3JBP_097 | 1/AA/3032:3039 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_3JBP_098 | 1/AA/3063:3071 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_3JBP_100 | 1/AA/3127:3133 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_3JBP_102 | 1/AA/3256:3263 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_3JBP_103 | 1/AA/3279:3285 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_3JBP_104 | 1/AA/3322:3327 | GNRA | homologous HL_8C3A_065 NA | |
| HL_3JBP_105 | 1/AA/3411:3416 | GNRA | homologous HL_8C3A_066 NA | |
| HL_3JBP_106 | 1/AA/3453:3458 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_3JBP_107 | 1/AA/3494:3509 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_3JBP_108 | 1/AA/3697:3705 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_3JBP_109 | 1/AA/3740:3749 | No text annotation | geometric HL_7KI3_001 HL_75660.7 | |
| HL_3JBP_119 | 1/AB/32:45 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_3JBP_110 | 1/AB/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_3JBP_111 | 1/AB/86:91 | GNRA | geometric HL_5M0J_002 HL_34789.4 | |
| HL_3JBP_120 | 1/AC/51:60 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_3JBP_112 | 1/AC/77:82 | GNRA | geometric HL_6JDV_001 HL_34789.4 | |
| HL_3JBP_113 | 1/AC/111:117 | tRNA anticodon loop with synthetase | geometric HL_1H4S_002 HL_89167.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JBP_001 | No text annotation | ||
| HL_3JBP_115 | No text annotation | ||
| HL_3JBP_002 | No text annotation | ||
| HL_3JBP_003 | No text annotation | ||
| HL_3JBP_005 | No text annotation | ||
| HL_3JBP_015 | No text annotation | ||
| HL_3JBP_016 | No text annotation | ||
| HL_3JBP_017 | GNRA variation | ||
| HL_3JBP_018 | No text annotation | ||
| HL_3JBP_019 | No text annotation | ||
| HL_3JBP_021 | No text annotation | ||
| HL_3JBP_029 | No text annotation | ||
| HL_3JBP_031 | No text annotation | ||
| HL_3JBP_033 | GNRA | ||
| HL_3JBP_035 | GNRA | ||
| HL_3JBP_037 | No text annotation | ||
| HL_3JBP_038 | No text annotation | ||
| HL_3JBP_041 | No text annotation | ||
| HL_3JBP_044 | T-loop with 2 stacked bulged bases | ||
| HL_3JBP_064 | No text annotation | ||
| HL_3JBP_065 | No text annotation | ||
| HL_3JBP_068 | No text annotation | ||
| HL_3JBP_069 | No text annotation | ||
| HL_3JBP_070 | GNRA | ||
| HL_3JBP_072 | No text annotation | ||
| HL_3JBP_076 | GNRA | ||
| HL_3JBP_080 | No text annotation | ||
| HL_3JBP_118 | No text annotation | ||
| HL_3JBP_085 | No text annotation | ||
| HL_3JBP_099 | GNRA | ||
| HL_3JBP_101 | No text annotation | ||
| HL_3JBP_121 | No text annotation | ||
| HL_3JBP_114 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JBP_003 | 1/A/24:26, 1/A/607:608 | Single bulged C | geometric IL_7KGA_004 IL_05642.2 | |
| IL_3JBP_004 | 1/A/37:41, 1/A/472:477 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_3JBP_005 | 1/A/42:48, 1/A/437:439 | No text annotation | geometric IL_4V88_387 NA | |
| IL_3JBP_006 | 1/A/50:52, 1/A/434:435 | Minor groove platform | geometric IL_5J7L_004 NA | |
| IL_3JBP_008 | 1/A/64:68, 1/A/84:88 | UAA/GAN related | geometric IL_2R8S_002 IL_77691.7 | |
| IL_3JBP_009 | 1/A/111:114, 1/A/308:311 | Tandem non-canonical cWW pairs | geometric IL_4V88_391 NA | |
| IL_3JBP_010 | 1/A/115:118, 1/A/306:307 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_3JBP_011 | 1/A/119:123, 1/A/302:305 | UAA/GAN related | geometric IL_3LOA_001 IL_60988.2 | |
| IL_3JBP_012 | 1/A/141:147, 1/A/163:170 | tWH-tWH-tHW-tHW | geometric IL_4V88_394 NA | |
| IL_3JBP_013 | 1/A/216:245, 1/A/252:254 | No text annotation | ||
| IL_3JBP_015 | 1/A/270:272, 1/A/291:292 | No text annotation | ||
| IL_3JBP_016 | 1/A/317:322, 1/A/354:361 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_3JBP_017 | 1/A/324:329, 1/A/351:352 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_3JBP_018 | 1/A/369:371, 1/A/382:387 | No text annotation | geometric IL_4V88_404 NA | |
| IL_3JBP_019 | 1/A/395:397, 1/A/412:414 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_3JBP_020 | 1/A/417:419, 1/A/426:428 | Isolated near basepair | geometric IL_3NJ7_003 IL_42997.5 | |
| IL_3JBP_021 | 1/A/445:447, 1/A/469:470 | Single bulged U | geometric IL_4LFB_014 IL_97561.3 | |
| IL_3JBP_236 | 1/A/521:523, 1/A/543:550 | No text annotation | homologous IL_8CRE_418 IL_02511.1 | |
| IL_3JBP_026 | 1/A/564:566, 1/A/593:594 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_3JBP_027 | 1/A/569:575, 1/A/582:590 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_3JBP_028 | 1/A/623:629, 1/A/1205:1206 | No text annotation | geometric IL_4V88_416 NA | |
| IL_3JBP_029 | 1/A/631:633, 1/A/1042:1044 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_3JBP_032 | 1/A/796:797, 1/A/865:868 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_3JBP_033 | 1/A/798:800, 1/A/862:864 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 NA | |
| IL_3JBP_034 | 1/A/801:809, 1/A/854:861 | No text annotation | geometric IL_4V88_425 NA | |
| IL_3JBP_035 | 1/A/827:835, 1/A/845:846 | No text annotation | ||
| IL_3JBP_041 | 1/A/933:934, 1/A/1031:1034 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_3JBP_042 | 1/A/936:937, 1/A/1027:1029 | Single bulged U | geometric IL_6UFH_004 IL_97561.3 | |
| IL_3JBP_043 | 1/A/939:942, 1/A/1023:1025 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_01003.3 | |
| IL_3JBP_044 | 1/A/943:946, 1/A/1020:1022 | Isolated non-canonical cWW pair | geometric IL_5T3K_001 IL_01003.3 | |
| IL_3JBP_046 | 1/A/962:968, 1/A/979:988 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_3JBP_047 | 1/A/1054:1058, 1/A/1084:1085 | Left turn | geometric IL_4LFB_032 IL_29346.3 | |
| IL_3JBP_048 | 1/A/1059:1063, 1/A/1079:1083 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_3JBP_049 | 1/A/1103:1105, 1/A/1196:1202 | Decoding loop related | geometric IL_5Z1I_003 NA | |
| IL_3JBP_051 | 1/A/1212:1219, 1/A/1230:1235 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4V88_440 NA | |
| IL_3JBP_052 | 1/A/1247:1248, 1/A/1927:1929 | Single bulged A | geometric IL_4LFB_035 IL_14190.2 | |
| IL_3JBP_054 | 1/A/1258:1261, 1/A/1914:1918 | C-loop | geometric IL_4V88_443 NA | |
| IL_3JBP_056 | 1/A/1279:1280, 1/A/1705:1707 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_3JBP_057 | 1/A/1369:1371, 1/A/1686:1687 | Single bulged U | geometric IL_4V88_449 NA | |
| IL_3JBP_058 | 1/A/1373:1377, 1/A/1682:1684 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_3JBP_227 | 1/A/1373:1379, 1/A/1676:1684 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_3JBP_059 | 1/A/1377:1379, 1/A/1676:1682 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_3JBP_060 | 1/A/1381:1382, 1/A/1672:1674 | Single bulged A | geometric IL_4V88_452 NA | |
| IL_3JBP_061 | 1/A/1408:1410, 1/A/1419:1420 | Minor groove platform | geometric IL_6DLR_003 IL_34520.3 | |
| IL_3JBP_229 | 1/A/1725:1733, 1/A/1815:1825 | No text annotation | ||
| IL_3JBP_066 | 1/A/1791:1794, 1/A/1805:1808 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_3JBP_070 | 1/A/1933:1935, 1/A/2056:2059 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_3JBP_071 | 1/A/1935:1938, 1/A/2052:2056 | No text annotation | geometric IL_4V88_464 NA | |
| IL_3JBP_073 | 1/A/1941:1943, 1/A/2046:2049 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
| IL_3JBP_074 | 1/A/1947:1949, 1/A/2040:2042 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_01003.3 | |
| IL_3JBP_075 | 1/A/1950:1953, 1/A/2036:2039 | Double sheared | geometric IL_4V88_468 NA | |
| IL_3JBP_076 | 1/A/1953:1955, 1/A/2035:2036 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_3JBP_077 | 1/A/1955:1956, 1/A/2033:2035 | Single stack bend | geometric IL_4LFB_041 IL_15011.2 | |
| IL_3JBP_078 | 1/A/1957:1959, 1/A/2031:2032 | Single stack bend | geometric IL_4V83_236 IL_15011.2 | |
| IL_3JBP_079 | 1/A/1962:1964, 1/A/2026:2028 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_01003.3 | |
| IL_3JBP_080 | 1/A/1966:1969, 1/A/2021:2024 | Double sheared | geometric IL_4V88_471 NA | |
| IL_3JBP_081 | 1/A/1970:1972, 1/A/2018:2020 | Isolated non-canonical cWW pair | geometric IL_4KYY_002 IL_71625.3 | |
| IL_3JBP_082 | 1/A/1975:1979, 1/A/2011:2015 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_3JBP_083 | 1/A/1979:1982, 1/A/2008:2011 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_3JBP_086 | 1/AA/31:38, 1/AA/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_3JBP_087 | 1/AA/82:89, 1/AA/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_3JBP_088 | 1/AA/118:123, 1/AA/158:159 | Multiple bulged bases | geometric IL_5J7L_005 NA | |
| IL_3JBP_230 | 1/AA/118:124, 1/AA/153:159 | No text annotation | ||
| IL_3JBP_089 | 1/AA/123:124, 1/AA/153:158 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_3JBP_094 | 1/AA/178:183, 1/AA/248:252 | No text annotation | ||
| IL_3JBP_095 | 1/AA/186:191, 1/AA/240:245 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_3JBP_231 | 1/AA/186:193, 1/AA/238:245 | No text annotation | ||
| IL_3JBP_096 | 1/AA/197:199, 1/AA/212:213 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_3JBP_097 | 1/AA/345:347, 1/AC/29:30 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_3JBP_098 | 1/AA/385:388, 1/AA/399:413 | No text annotation | ||
| IL_3JBP_100 | 1/AA/436:438, 1/AA/709:711 | Isolated non-canonical cWW pair | geometric IL_5TBW_046 NA | |
| IL_3JBP_101 | 1/AA/519:522, 1/AA/633:636 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_71194.2 | |
| IL_3JBP_240 | 1/AA/523:526, 1/AA/629:632 | Tandem non-canonical cWW pairs | homologous IL_8CRE_018 NA | |
| IL_3JBP_103 | 1/AA/529:533, 1/AA/619:626 | No text annotation | ||
| IL_3JBP_105 | 1/AA/591:594, 1/AA/599:600 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_3JBP_107 | 1/AA/743:745, 1/AA/914:916 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_01003.3 | |
| IL_3JBP_108 | 1/AA/758:762, 1/AA/777:794 | No text annotation | ||
| IL_3JBP_109 | 1/AA/827:833, 1/AA/861:868 | No text annotation | ||
| IL_3JBP_110 | 1/AA/875:876, 1/AA/898:900 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_3JBP_241 | 1/AA/880:881, 1/AA/892:894 | Single bulged U | geometric IL_1GID_012 NA | |
| IL_3JBP_112 | 1/AA/922:924, 1/AA/1057:1059 | Isolated non-canonical cWW pair | homologous IL_5TBW_027 NA | |
| IL_3JBP_113 | 1/AA/924:928, 1/AA/1050:1057 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_3JBP_114 | 1/AA/947:948, 1/AA/1014:1016 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_3JBP_115 | 1/AA/952:953, 1/AA/978:980 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_3JBP_117 | 1/AA/988:991, 1/AA/1007:1009 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_3JBP_118 | 1/AA/992:994, 1/AA/1005:1006 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_3JBP_119 | 1/AA/1026:1028, 1/AA/1038:1042 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_3JBP_120 | 1/AA/1088:1089, 1/AA/1239:1241 | Single stack bend | homologous IL_5TBW_035 NA | |
| IL_3JBP_121 | 1/AA/1095:1104, 1/AA/1228:1233 | No text annotation | ||
| IL_3JBP_122 | 1/AA/1105:1107, 1/AA/1226:1227 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_3JBP_123 | 1/AA/1113:1119, 1/AA/1175:1181 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_3JBP_124 | 1/AA/1119:1120, 1/AA/1173:1175 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_3JBP_125 | 1/AA/1121:1126, 1/AA/1169:1172 | C-loop | homologous IL_5TBW_040 NA | |
| IL_3JBP_126 | 1/AA/1128:1131, 1/AA/1164:1167 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_3JBP_127 | 1/AA/1131:1133, 1/AA/1162:1164 | Isolated non-canonical cWW pair | homologous IL_5TBW_042 NA | |
| IL_3JBP_130 | 1/AA/1198:1200, 1/AA/1208:1209 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_3JBP_131 | 1/AA/1248:1250, 1/AA/1264:1266 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_3JBP_132 | 1/AA/1294:1299, 1/AA/1456:1461 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_91079.1 | |
| IL_3JBP_133 | 1/AA/1301:1308, 1/AA/1453:1454 | SSU/LSU pseudoknot | geometric IL_4V9F_038 IL_11411.1 | |
| IL_3JBP_134 | 1/AA/1308:1310, 1/AA/1452:1453 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_3JBP_135 | 1/AA/1315:1322, 1/AA/1442:1447 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_3JBP_136 | 1/AA/1322:1333, 1/AA/1427:1442 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_3JBP_137 | 1/AA/1335:1337, 1/AA/1424:1425 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_3JBP_138 | 1/AA/1475:1481, 1/AA/1499:1506 | No text annotation | ||
| IL_3JBP_139 | 1/AA/1525:1527, 1/AA/1577:1580 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_3JBP_140 | 1/AA/1530:1534, 1/AA/1569:1574 | No text annotation | ||
| IL_3JBP_141 | 1/AA/1536:1543, 1/AA/1563:1567 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_3JBP_142 | 1/AA/1548:1550, 1/AA/1557:1558 | Single bulged U | geometric IL_5TBW_025 NA | |
| IL_3JBP_143 | 1/AA/1593:1599, 1/AA/2647:2652 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_3JBP_232 | 1/AA/1649:1654, 1/AA/1662:1665 | No text annotation | homologous IL_8C3A_066 NA | |
| IL_3JBP_144 | 1/AA/1681:1685, 1/AA/1728:1733 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_3JBP_145 | 1/AA/1759:1762, 1/AA/2090:2095 | No text annotation | ||
| IL_3JBP_146 | 1/AA/1768:1770, 1/AA/2082:2084 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 NA | |
| IL_3JBP_147 | 1/AA/1800:1804, 1/AA/2028:2032 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_3JBP_149 | 1/AA/1823:1824, 1/AA/2001:2003 | Major groove platform | geometric IL_7A0S_088 IL_46637.2 | |
| IL_3JBP_150 | 1/AA/1826:1829, 1/AA/1996:1999 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_3JBP_151 | 1/AA/1849:1853, 1/AA/1967:1972 | No text annotation | geometric IL_5TBW_071 NA | |
| IL_3JBP_153 | 1/AA/1868:1874, 1/AA/1884:1890 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_3JBP_157 | 1/AA/2151:2156, 1/AA/2640:2642 | No text annotation | geometric IL_7RQB_064 NA | |
| IL_3JBP_158 | 1/AA/2163:2165, 1/AA/2631:2633 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_3JBP_159 | 1/AA/2166:2169, 1/AA/2629:2630 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_3JBP_233 | 1/AA/2166:2174, 1/AA/2626:2630 | No text annotation | homologous IL_8P9A_305 IL_80252.1 | |
| IL_3JBP_160 | 1/AA/2169:2174, 1/AA/2626:2629 | Intercalated tWH | homologous IL_5TBW_077 NA | |
| IL_3JBP_161 | 1/AA/2186:2191, 1/AA/2196:2202 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_3JBP_162 | 1/AA/2208:2210, 1/AA/2399:2401 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_3JBP_163 | 1/AA/2215:2216, 1/AA/2391:2394 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_3JBP_164 | 1/AA/2421:2422, 1/AA/2616:2618 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_3JBP_165 | 1/AA/2449:2455, 1/AA/2466:2473 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_3JBP_166 | 1/AA/2489:2492, 1/AA/2538:2539 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_3JBP_167 | 1/AA/2493:2494, 1/AA/2534:2537 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_3JBP_168 | 1/AA/2497:2499, 1/AA/2530:2531 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_3JBP_169 | 1/AA/2499:2503, 1/AA/2528:2530 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_3JBP_170 | 1/AA/2504:2509, 1/AA/2522:2527 | No text annotation | ||
| IL_3JBP_171 | 1/AA/2569:2570, 1/AA/2600:2603 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_3JBP_172 | 1/AA/2570:2581, 1/AA/2597:2600 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_3JBP_173 | 1/AA/2684:2687, 1/AA/3345:3347 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_3JBP_174 | 1/AA/2689:2691, 1/AA/3340:3343 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_3JBP_175 | 1/AA/2702:2704, 1/AA/3170:3171 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_3JBP_176 | 1/AA/2705:2706, 1/AA/3166:3169 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_3JBP_177 | 1/AA/2716:2718, 1/AA/2943:2946 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_3JBP_180 | 1/AA/2829:2835, 1/AA/2918:2926 | No text annotation | ||
| IL_3JBP_181 | 1/AA/2953:2954, 1/AA/2964:2966 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_3JBP_182 | 1/AA/3005:3007, 1/AA/3025:3029 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_3JBP_183 | 1/AA/3109:3113, 1/AA/3145:3147 | No text annotation | geometric IL_4V84_070 NA | |
| IL_3JBP_184 | 1/AA/3115:3124, 1/AA/3136:3143 | No text annotation | ||
| IL_3JBP_185 | 1/AA/3182:3183, 1/AA/3224:3226 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_3JBP_186 | 1/AA/3183:3185, 1/AA/3222:3224 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_3JBP_187 | 1/AA/3185:3187, 1/AA/3221:3222 | Major groove platform | homologous IL_5TBW_104 NA | |
| IL_3JBP_188 | 1/AA/3187:3189, 1/AA/3217:3221 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_3JBP_189 | 1/AA/3194:3198, 1/AA/3208:3212 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_3JBP_190 | 1/AA/3235:3236, 1/AA/3308:3310 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_3JBP_192 | 1/AA/3240:3241, 1/AA/3299:3302 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_3JBP_193 | 1/AA/3250:3251, 1/AA/3268:3271 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_3JBP_195 | 1/AA/3319:3320, 1/AA/3329:3331 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_3JBP_196 | 1/AA/3360:3363, 1/AA/3375:3379 | No text annotation | ||
| IL_3JBP_197 | 1/AA/3390:3393, 1/AA/3524:3530 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_3JBP_198 | 1/AA/3398:3400, 1/AA/3426:3428 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_3JBP_199 | 1/AA/3405:3411, 1/AA/3416:3421 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_019 IL_16458.6 | |
| IL_3JBP_200 | 1/AA/3433:3437, 1/AA/3476:3478 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_3JBP_201 | 1/AA/3440:3444, 1/AA/3469:3473 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_3JBP_202 | 1/AA/3448:3449, 1/AA/3462:3465 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_3JBP_203 | 1/AA/3486:3491, 1/AA/3512:3517 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_3JBP_204 | 1/AA/3554:3573, 1/AA/3674:3675 | Multiple bulged bases | geometric IL_1R3E_001 IL_05670.1 | |
| IL_3JBP_205 | 1/AA/3580:3582, 1/AA/3620:3621 | Single bulged A | geometric IL_1U63_004 IL_14190.2 | |
| IL_3JBP_234 | 1/AA/3583:3591, 1/AA/3614:3619 | No text annotation | ||
| IL_3JBP_235 | 1/AA/3591:3592, 1/AA/3612:3614 | Single stack bend | geometric IL_9DFE_091 IL_15011.2 | |
| IL_3JBP_209 | 1/AA/3694:3697, 1/AA/3705:3708 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_3JBP_211 | 1/AA/3716:3717, 1/AA/3773:3775 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_3JBP_212 | 1/AA/3720:3722, 1/AA/3765:3770 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_3JBP_213 | 1/AA/3724:3729, 1/AA/3759:3763 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_3JBP_215 | 1/AA/3734:3737, 1/AA/3752:3755 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_3JBP_216 | 1/AB/15:16, 1/AB/62:64 | Single bulged A | geometric IL_5TBW_372 NA | |
| IL_3JBP_217 | 1/AB/21:27, 1/AB/52:57 | No text annotation | geometric IL_9E6Q_106 IL_41504.1 | |
| IL_3JBP_219 | 1/AB/32:36, 1/AB/41:45 | Symmetric double minor groove platform | geometric IL_4V9F_104 IL_58103.12 | |
| IL_3JBP_220 | 1/AB/71:78, 1/AB/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.3 | |
| IL_3JBP_221 | 1/AB/82:85, 1/AB/92:94 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10892.2 | |
| IL_3JBP_222 | 1/AC/48:68, 1/AC/99:103 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_3JBP_223 | 1/AC/68:70, 1/AC/96:99 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_3JBP_224 | 1/AC/73:76, 1/AC/83:93 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JBP_001 | Isolated non-canonical cWW pair | ||
| IL_3JBP_002 | No text annotation | ||
| IL_3JBP_007 | No text annotation | ||
| IL_3JBP_014 | Single bulged A | ||
| IL_3JBP_022 | C-loop | ||
| IL_3JBP_023 | Single bulged G | ||
| IL_3JBP_024 | No text annotation | ||
| IL_3JBP_025 | SSU/LSU pseudoknot | ||
| IL_3JBP_030 | tSH-tHW-tHS | ||
| IL_3JBP_031 | Isolated cWH basepair | ||
| IL_3JBP_036 | No text annotation | ||
| IL_3JBP_037 | Isolated non-canonical cWW pair | ||
| IL_3JBP_038 | Tandem non-canonical cWW pairs | ||
| IL_3JBP_237 | Isolated non-canonical cWW pair | ||
| IL_3JBP_039 | Isolated non-canonical cWW contact | ||
| IL_3JBP_040 | Isolated non-canonical cWW pair | ||
| IL_3JBP_226 | Tandem non-canonical cWW pairs | ||
| IL_3JBP_045 | Isolated non-canonical cWW pair | ||
| IL_3JBP_050 | Isolated non-canonical cWW pair | ||
| IL_3JBP_053 | Single bulged G | ||
| IL_3JBP_055 | Isolated non-canonical cWW pair | ||
| IL_3JBP_228 | Partly complementary | ||
| IL_3JBP_062 | Tandem non-canonical cWW pairs | ||
| IL_3JBP_238 | Isolated non-canonical cWW pair | ||
| IL_3JBP_063 | No text annotation | ||
| IL_3JBP_064 | No text annotation | ||
| IL_3JBP_065 | Tandem non-canonical cWW pairs | ||
| IL_3JBP_067 | No text annotation | ||
| IL_3JBP_068 | Single stack bend | ||
| IL_3JBP_069 | Single stack bend | ||
| IL_3JBP_072 | Isolated non-canonical cWW pair | ||
| IL_3JBP_084 | Single stack bend | ||
| IL_3JBP_085 | Single bulged U | ||
| IL_3JBP_090 | Isolated non-canonical cWW pair | ||
| IL_3JBP_239 | Triple non-canonical cWW pairs | ||
| IL_3JBP_091 | No text annotation | ||
| IL_3JBP_092 | Tandem non-canonical cWW pairs | ||
| IL_3JBP_093 | No text annotation | ||
| IL_3JBP_099 | Triple sheared with non-canonical cWW | ||
| IL_3JBP_102 | No text annotation | ||
| IL_3JBP_104 | No text annotation | ||
| IL_3JBP_106 | Tandem non-canonical cWW pairs | ||
| IL_3JBP_111 | Isolated non-canonical cWW pair | ||
| IL_3JBP_116 | Triple sheared | ||
| IL_3JBP_128 | Isolated non-canonical cWW pair | ||
| IL_3JBP_129 | Isolated non-canonical cWW pair | ||
| IL_3JBP_148 | Isolated non-canonical cWW pair | ||
| IL_3JBP_152 | Isolated non-canonical cWW pair | ||
| IL_3JBP_154 | Tandem non-canonical cWW pairs | ||
| IL_3JBP_155 | Isolated non-canonical cWW pair | ||
| IL_3JBP_156 | Triple non-canonical cWW pairs | ||
| IL_3JBP_242 | No text annotation | ||
| IL_3JBP_178 | Isolated cWS basepair | ||
| IL_3JBP_179 | Tandem non-canonical cWW pairs | ||
| IL_3JBP_191 | No text annotation | ||
| IL_3JBP_194 | Isolated non-canonical cWW pair | ||
| IL_3JBP_206 | No text annotation | ||
| IL_3JBP_207 | Tandem non-canonical cWW pairs | ||
| IL_3JBP_208 | No text annotation | ||
| IL_3JBP_210 | Isolated non-canonical cWW pair | ||
| IL_3JBP_214 | Single bulged U | ||
| IL_3JBP_218 | Major groove minor groove platform; mini C-loop | ||
| IL_3JBP_225 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3JBP_001 | 1/A/41:42, 1/A/439:445, 1/A/470:472 | No text annotation | geometric J3_4V88_078 NA | |
| J3_3JBP_035 | 1/A/41:48, 1/A/437:445, 1/A/470:472 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_3JBP_002 | 1/A/640:642, 1/A/929:933, 1/A/1034:1035 | No text annotation | geometric J3_4V88_080 NA | |
| J3_3JBP_036 | 1/A/640:642, 1/A/929:934, 1/A/1031:1035 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_3JBP_003 | 1/A/810:813, 1/A/823:825, 1/A/848:853 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_3JBP_004 | 1/A/950:953, 1/A/997:1005, 1/A/1012:1016 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_3JBP_005 | 1/A/1106:1108, 1/A/1180:1184, 1/A/1191:1195 | No text annotation | ||
| J3_3JBP_006 | 1/A/1262:1265, 1/A/1878:1884, 1/A/1906:1913 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_3JBP_008 | 1/A/1281:1288, 1/A/1299:1310, 1/A/1700:1704 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_3JBP_009 | 1/A/1316:1321, 1/A/1364:1368, 1/A/1688:1694 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_3JBP_037 | 1/A/1384:1389, 1/A/1429:1434, 1/A/1665:1670 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_3JBP_011 | 1/A/1394:1395, 1/A/1405:1408, 1/A/1420:1424 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_3JBP_013 | 1/A/1716:1720, 1/A/1830:1837, 1/A/1868:1871 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_3JBP_014 | 1/A/1734:1743, 1/A/1786:1790, 1/A/1809:1814 | No text annotation | ||
| J3_3JBP_015 | 1/AA/113:117, 1/AA/160:163, 1/AA/268:274 | No text annotation | ||
| J3_3JBP_039 | 1/AA/193:197, 1/AA/213:222, 1/AA/234:238 | No text annotation | geometric J3_8VTW_041 NA | |
| J3_3JBP_040 | 1/AA/348:364, 1/AA/371:376, 1/AC/25:28 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_3JBP_016 | 1/AA/377:385, 1/AA/413:414, 1/AC/23:24 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_3JBP_041 | 1/AA/377:388, 1/AA/399:414, 1/AC/23:24 | No text annotation | ||
| J3_3JBP_017 | 1/AA/446:454, 1/AA/501:506, 1/AA/692:701 | No text annotation | ||
| J3_3JBP_018 | 1/AA/512:514, 1/AA/641:653, 1/AA/680:686 | No text annotation | ||
| J3_3JBP_019 | 1/AA/540:548, 1/AA/580:582, 1/AA/608:612 | No text annotation | ||
| J3_3JBP_042 | 1/AA/540:548, 1/AA/580:586, 1/AA/605:612 | No text annotation | ||
| J3_3JBP_020 | 1/AA/933:939, 1/AA/1024:1026, 1/AA/1042:1045 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_3JBP_021 | 1/AA/948:950, 1/AA/982:987, 1/AA/1010:1014 | No text annotation | ||
| J3_3JBP_022 | 1/AA/1108:1109, 1/AA/1185:1189, 1/AA/1218:1225 | No text annotation | ||
| J3_3JBP_023 | 1/AA/1633:1634, 1/AA/2124:2126, 1/AA/2138:2145 | No text annotation | ||
| J3_3JBP_024 | 1/AA/1637:1640, 1/AA/2104:2110, 1/AA/2119:2121 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_3JBP_025 | 1/AA/1675:1680, 1/AA/1734:1738, 1/AA/1755:1756 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_3JBP_026 | 1/AA/1688:1691, 1/AA/1700:1710, 1/AA/1723:1725 | No text annotation | ||
| J3_3JBP_028 | 1/AA/1780:1781, 1/AA/1790:1800, 1/AA/2032:2033 | No text annotation | ||
| J3_3JBP_043 | 1/AA/1809:1813, 1/AA/2013:2014, 1/AA/2018:2023 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_3JBP_029 | 1/AA/1854:1860, 1/AA/1898:1905, 1/AA/1964:1966 | No text annotation | ||
| J3_3JBP_030 | 1/AA/2725:2728, 1/AA/2821:2825, 1/AA/2930:2936 | No text annotation | geometric J3_4V9F_007 J3_86017.1 | |
| J3_3JBP_044 | 1/AA/2990:2992, 1/AA/3093:3104, 1/AA/3152:3157 | No text annotation | homologous J3_8P9A_061 J3_04772.1 | |
| J3_3JBP_031 | 1/AA/3003:3005, 1/AA/3029:3031, 1/AA/3040:3045 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_3JBP_032 | 1/AA/3245:3248, 1/AA/3273:3275, 1/AA/3289:3295 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_3JBP_045 | 1/AA/3575:3580, 1/AA/3621:3627, 1/AA/3658:3672 | No text annotation | ||
| J3_3JBP_033 | 1/AA/3691:3693, 1/AA/3709:3712, 1/AA/3779:3783 | No text annotation | ||
| J3_3JBP_034 | 1/AB/9:14, 1/AB/65:66, 1/AB/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_3JBP_046 | 1/AC/48:49, 1/AC/62:68, 1/AC/99:103 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_3JBP_002 | 1/A/101:109, 1/A/313:315, 1/A/363:367, 1/A/389:390 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_3JBP_003 | 1/A/629:631, 1/A/1044:1049, 1/A/1090:1101, 1/A/1204:1205 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J4_3JBP_004 | 1/AA/112:113, 1/AA/274:279, 1/AA/300:307, 1/AA/324:327 | No text annotation | ||
| J4_3JBP_005 | 1/AA/193:197, 1/AA/213:216, 1/AA/220:222, 1/AA/234:238 | No text annotation | ||
| J4_3JBP_006 | 1/AA/1600:1606, 1/AA/1624:1633, 1/AA/2145:2148, 1/AA/2645:2646 | No text annotation | ||
| J4_3JBP_007 | 1/AA/1641:1645, 1/AA/1669:1674, 1/AA/1757:1758, 1/AA/2096:2103 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_3JBP_008 | 1/AA/1829:1830, 1/AA/1848:1849, 1/AA/1972:1976, 1/AA/1992:1996 | No text annotation | ||
| J4_3JBP_009 | 1/AA/2423:2427, 1/AA/2439:2443, 1/AA/2479:2483, 1/AA/2610:2615 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_3JBP_010 | 1/AA/2485:2487, 1/AA/2541:2542, 1/AA/2560:2569, 1/AA/2603:2608 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_3JBP_011 | 1/AA/2993:2997, 1/AA/3051:3055, 1/AA/3079:3081, 1/AA/3090:3092 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_3JBP_013 | 1/AA/3396:3398, 1/AA/3428:3429, 1/AA/3482:3484, 1/AA/3519:3521 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J5_3JBP_001 | 1/A/31:35, 1/A/479:485, 1/A/516:521, 1/A/550:553, 1/A/599:602 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_3JBP_014 | 1/A/31:35, 1/A/479:485, 1/A/516:523, 1/A/543:553, 1/A/599:602 | No text annotation | ||
| J5_3JBP_003 | 1/A/54:57, 1/A/92:99, 1/A/392:394, 1/A/415:417, 1/A/428:432 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_3JBP_004 | 1/A/126:140, 1/A/171:179, 1/A/206:210, 1/A/260:266, 1/A/295:299 | No text annotation | ||
| J5_3JBP_005 | 1/A/126:140, 1/A/171:179, 1/A/206:210, 1/A/260:268, 1/A/294:299 | No text annotation | ||
| J5_3JBP_015 | 1/A/643:648, 1/A/752:755, 1/A/792:793, 1/A/871:877, 1/A/926:928 | No text annotation | ||
| J5_3JBP_007 | 1/AA/20:22, 1/AC/39:46, 1/AC/105:110, 1/AC/118:119, 1/AC/144:146 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_3JBP_008 | 1/AA/736:741, 1/AA/918:921, 1/AA/1060:1063, 1/AA/1524:1525, 1/AA/1580:1586 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_3JBP_009 | 1/AA/753:756, 1/AA/796:800, 1/AA/807:823, 1/AA/872:873, 1/AA/902:906 | No text annotation | ||
| J5_3JBP_010 | 1/AA/1600:1606, 1/AA/1624:1634, 1/AA/2124:2126, 1/AA/2138:2148, 1/AA/2645:2646 | No text annotation | ||
| J5_3JBP_011 | 1/AA/2174:2182, 1/AA/2206:2207, 1/AA/2402:2403, 1/AA/2407:2415, 1/AA/2624:2626 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_3JBP_012 | 1/AA/2692:2699, 1/AA/3174:3182, 1/AA/3226:3235, 1/AA/3310:3316, 1/AA/3334:3339 | No text annotation | ||
| J5_3JBP_013 | 1/AA/2709:2712, 1/AA/2950:2953, 1/AA/2966:2967, 1/AA/2989:2990, 1/AA/3157:3163 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J6_3JBP_001 | 1/AA/23:28, 1/AA/56:68, 1/AA/75:79, 1/AA/106:110, 1/AA/329:338, 1/AC/37:38 | No text annotation | ||
| J6_3JBP_002 | 1/AA/2709:2712, 1/AA/2950:2953, 1/AA/2966:2967, 1/AA/2989:2992, 1/AA/3093:3104, 1/AA/3152:3163 | No text annotation | ||
| J7_3JBP_001 | 1/AA/1068:1074, 1/AA/1085:1087, 1/AA/1242:1245, 1/AA/1269:1274, 1/AA/1285:1289, 1/AA/1466:1467, 1/AA/1514:1519 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3JBP_007 | No text annotation | ||
| J3_3JBP_010 | No text annotation | ||
| J3_3JBP_012 | No text annotation | ||
| J3_3JBP_038 | No text annotation | ||
| J3_3JBP_027 | No text annotation | ||
| J4_3JBP_001 | No text annotation | ||
| J4_3JBP_012 | No text annotation | ||
| J5_3JBP_002 | No text annotation | ||
| J5_3JBP_006 | No text annotation |
Coloring options: