HL_3JBP_070

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_070 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.1523

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JBP|1|AA|C|1551
3JBP|1|AA|G|1552
3JBP|1|AA|U|1553
3JBP|1|AA|G|1554
3JBP|1|AA|A|1555
3JBP|1|AA|G|1556

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein eL28

Chain A8

60S ribosomal protein eL32