HL_3JBP_075

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

3JBP|1|AA|U|1749, 3JBP|1|AA|U|1750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_075 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1295

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JBP|1|AA|G|1742
3JBP|1|AA|U|1743
3JBP|1|AA|U|1744
3JBP|1|AA|G|1745
3JBP|1|AA|A|1746
3JBP|1|AA|U|1747
3JBP|1|AA|A|1748
3JBP|1|AA|U|1749
3JBP|1|AA|U|1750
3JBP|1|AA|C|1751

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain AY

60S ribosomal protein uL23

Chain Aa

60S ribosomal protein eL34