HL_3JBP_077

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GUUUUCUUU

Length

9 nucleotides

Bulged bases

3JBP|1|AA|U|1842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_077 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2097

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3JBP|1|AA|G|1835
3JBP|1|AA|U|1836
3JBP|1|AA|U|1837
3JBP|1|AA|U|1838
3JBP|1|AA|U|1839
3JBP|1|AA|C|1840
3JBP|1|AA|U|1841
3JBP|1|AA|U|1842
3JBP|1|AA|U|1843

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain AX

60S ribosomal protein eL22