HL_3JBP_089

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AUGAAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_089 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.268

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JBP|1|AA|A|2512
3JBP|1|AA|U|2513
3JBP|1|AA|G|2514
3JBP|1|AA|A|2515
3JBP|1|AA|A|2516
3JBP|1|AA|A|2517
3JBP|1|AA|U|2518
3JBP|1|AA|U|2519

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ab

60S ribosomal protein eL36

Chain Ai

60S ribosomal protein eL44