HL_3JBP_096

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_096 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.2695

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3JBP|1|AA|A|3012
3JBP|1|AA|A|3013
3JBP|1|AA|C|3014
3JBP|1|AA|A|3015
3JBP|1|AA|G|3016
3JBP|1|AA|A|3017
3JBP|1|AA|A|3018
3JBP|1|AA|A|3019
3JBP|1|AA|U|3020

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein uL5