HL_3JBP_107

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUGAACGCCUCUUAAG

Length

16 nucleotides

Bulged bases

3JBP|1|AA|G|3500, 3JBP|1|AA|U|3506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_107 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1506

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3JBP|1|AA|C|3494
3JBP|1|AA|U|3495
3JBP|1|AA|G|3496
3JBP|1|AA|A|3497
3JBP|1|AA|A|3498
3JBP|1|AA|C|3499
3JBP|1|AA|G|3500
3JBP|1|AA|C|3501
3JBP|1|AA|C|3502
3JBP|1|AA|U|3503
3JBP|1|AA|C|3504
3JBP|1|AA|U|3505
3JBP|1|AA|U|3506
3JBP|1|AA|A|3507
3JBP|1|AA|A|3508
3JBP|1|AA|G|3509

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein uL6

Chain AK

60S ribosomal protein uL13

Chain Af

60S ribosomal protein eL40