HL_3JBP_112

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UUGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_112 not in the Motif Atlas

Geometric match to HL_6JDV_001

Geometric discrepancy: 0.2726

The information below is about HL_6JDV_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

3JBP|1|AC|U|77
3JBP|1|AC|U|78
3JBP|1|AC|G|79
3JBP|1|AC|C|80
3JBP|1|AC|A|81
3JBP|1|AC|G|82

Current chains

Chain AC

5.8S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AZ

60S ribosomal protein uL24

Chain Ae

60S ribosomal protein eL39