HL_3JBP_113
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UAAACUA
- Length
- 7 nucleotides
- Bulged bases
- 3JBP|1|AC|A|114, 3JBP|1|AC|U|116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBP_113 not in the Motif Atlas
- Geometric match to HL_1H4S_002
- Geometric discrepancy: 0.2101
- The information below is about HL_1H4S_002
- Detailed Annotation
- tRNA anticodon loop with synthetase
- Broad Annotation
- tRNA anticodon loop with synthetase
- Motif group
- HL_89167.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
3JBP|1|AC|U|111
3JBP|1|AC|A|112
3JBP|1|AC|A|113
3JBP|1|AC|A|114
3JBP|1|AC|C|115
3JBP|1|AC|U|116
3JBP|1|AC|A|117
Current chains
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein uL23
- Chain Ac
- 60S ribosomal protein eL37
- Chain Ae
- 60S ribosomal protein eL39
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