HL_3JBP_117

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUGUGAUUG

Length

9 nucleotides

Bulged bases

3JBP|1|AA|G|1656, 3JBP|1|AA|U|1660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|C|1654
3JBP|1|AA|U|1655
3JBP|1|AA|G|1656
3JBP|1|AA|U|1657
3JBP|1|AA|G|1658
3JBP|1|AA|A|1659
3JBP|1|AA|U|1660
3JBP|1|AA|U|1661
3JBP|1|AA|G|1662

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain AW

60S ribosomal protein uL22

Chain Ae

60S ribosomal protein eL39