HL_3JBP_119

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AUCCCAUCAGAACU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_119 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.1447

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3JBP|1|AB|A|32
3JBP|1|AB|U|33
3JBP|1|AB|C|34
3JBP|1|AB|C|35
3JBP|1|AB|C|36
3JBP|1|AB|A|37
3JBP|1|AB|U|38
3JBP|1|AB|C|39
3JBP|1|AB|A|40
3JBP|1|AB|G|41
3JBP|1|AB|A|42
3JBP|1|AB|A|43
3JBP|1|AB|C|44
3JBP|1|AB|U|45

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AG

60S ribosomal protein uL5

Chain AR

60S ribosomal protein uL18