HL_3JBU_022

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3JBU|1|A|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_022 not in the Motif Atlas

Geometric match to HL_1I6U_001

Geometric discrepancy: 0.3816

The information below is about HL_1I6U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3JBU|1|A|C|1028
3JBU|1|A|U|1029
3JBU|1|A|U|1030
3JBU|1|A|C|1031
3JBU|1|A|G|1032
3JBU|1|A|G|1033

Current chains

Chain A

16S rRNA

Nearby chains