Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3JBU_1051/A/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_3JBU_0021/A/80:89No text annotation
geometric
HL_6D12_002
HL_48417.5
HL_3JBU_0031/A/158:163GNRA
homologous
HL_5J7L_003
HL_37824.7
HL_3JBU_1251/A/186:191GNRA
geometric
HL_7QQP_003
HL_37824.7
HL_3JBU_0041/A/207:212UNCG
homologous
HL_5J7L_005
HL_34617.5
HL_3JBU_0051/A/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_3JBU_0061/A/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_3JBU_1261/A/320:333No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_3JBU_0081/A/342:347UNCG
homologous
HL_6CZR_080
NA
HL_3JBU_1071/A/367:393No text annotation
HL_3JBU_0091/A/379:384GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_3JBU_0101/A/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_3JBU_1081/A/460:472No text annotation
HL_3JBU_0121/A/521:528No text annotation
homologous
HL_6CZR_084
NA
HL_3JBU_0131/A/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_3JBU_0141/A/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_3JBU_0151/A/726:731GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_3JBU_0161/A/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_3JBU_0171/A/840:846No text annotation
geometric
HL_4V88_198
NA
HL_3JBU_0181/A/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_3JBU_0191/A/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_3JBU_0201/A/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_3JBU_0211/A/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_3JBU_0221/A/1028:1033UNCG
geometric
HL_1I6U_001
HL_34617.5
HL_3JBU_0231/A/1076:1081GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_3JBU_0241/A/1089:1096T-loop related
geometric
HL_5J7L_024
HL_77436.5
HL_3JBU_0251/A/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_3JBU_0261/A/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_3JBU_0271/A/1265:1270GNRA
geometric
HL_5J7L_027
HL_37824.7
HL_3JBU_0281/A/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_3JBU_1271/A/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_3JBU_1281/A/1449:1454UNCG
homologous
HL_4LFB_031
HL_34617.5
HL_3JBU_0311/A/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_3JBU_0321/a/38:44No text annotation
geometric
HL_5J7L_203
HL_47787.2
HL_3JBU_0331/a/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_3JBU_0341/b/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_3JBU_1131/b/86:96No text annotation
HL_3JBU_0351/b/87:94No text annotation
HL_3JBU_0361/b/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_3JBU_1291/b/135:144No text annotation
HL_3JBU_0371/b/137:142No text annotation
HL_3JBU_1151/b/152:174No text annotation
homologous
HL_4WF9_005
NA
HL_3JBU_0381/b/157:169No text annotation
HL_3JBU_0391/b/194:201No text annotation
homologous
HL_4WF9_006
HL_30068.2
HL_3JBU_0401/b/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_3JBU_0411/b/246:252No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_3JBU_0421/b/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_3JBU_0431/b/319:323No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_3JBU_0441/b/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_3JBU_1161/b/378:396No text annotation
HL_3JBU_0451/b/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_3JBU_0461/b/409:418Pseudoknot geometry
geometric
HL_4V9F_061
HL_93324.4
HL_3JBU_0471/b/462:467GNRA
homologous
HL_7RQB_015
NA
HL_3JBU_0481/b/487:493GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_3JBU_0491/b/543:550No text annotation
HL_3JBU_0501/b/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
HL_28252.8
HL_3JBU_0511/b/611:617No text annotation
HL_3JBU_0521/b/629:634GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_3JBU_0531/b/641:647GNRA
homologous
HL_4WF9_021
HL_37824.7
HL_3JBU_0541/b/710:721No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_3JBU_0551/b/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_3JBU_1191/b/778:786No text annotation
geometric
HL_6CF2_001
HL_87553.1
HL_3JBU_0561/b/779:785No text annotation
homologous
HL_9DFE_022
HL_87954.2
HL_3JBU_0571/b/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_3JBU_1301/b/870:907No text annotation
HL_3JBU_0581/b/883:893No text annotation
HL_3JBU_0591/b/952:965No text annotation
HL_3JBU_0601/b/978:985No text annotation
homologous
HL_7A0S_027
HL_42998.2
HL_3JBU_0611/b/1063:1075No text annotation
HL_3JBU_0621/b/1092:1099No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_3JBU_1311/b/1165:1184No text annotation
HL_3JBU_0631/b/1170:1179No text annotation
HL_3JBU_0641/b/1222:1227GNRA
homologous
HL_7A0S_031
HL_37824.7
HL_3JBU_0651/b/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.8
HL_3JBU_0661/b/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_57176.2
HL_3JBU_0671/b/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_3JBU_0681/b/1388:1399No text annotation
HL_3JBU_1321/b/1450:1461No text annotation
HL_3JBU_0701/b/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_3JBU_0711/b/1526:1546No text annotation
HL_3JBU_0721/b/1565:1568No text annotation
HL_3JBU_0731/b/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_3JBU_0741/b/1627:1639No text annotation
HL_3JBU_0751/b/1691:1696UNCG
geometric
HL_4JF2_003
HL_34617.5
HL_3JBU_0761/b/1728:1731No text annotation
geometric
HL_5TBW_068
NA
HL_3JBU_0771/b/1752:1756No text annotation
homologous
HL_7A0S_044
HL_80709.3
HL_3JBU_0781/b/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_3JBU_0791/b/1804:1813No text annotation
HL_3JBU_0801/b/1868:1873GNRA
geometric
HL_4V88_207
NA
HL_3JBU_0811/b/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_3JBU_0821/b/1949:1957No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_3JBU_0831/b/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.2
HL_3JBU_1221/b/2122:2176No text annotation
HL_3JBU_0841/b/2137:2154No text annotation
HL_3JBU_0851/b/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_3JBU_0861/b/2248:2256No text annotation
homologous
HL_4WF9_049
HL_85367.2
HL_3JBU_0871/b/2264:2276No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_3JBU_0881/b/2303:2313No text annotation
homologous
HL_7RQB_055
NA
HL_3JBU_0891/b/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.7
HL_3JBU_0901/b/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.7
HL_3JBU_0911/b/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_3JBU_0921/b/2471:2479No text annotation
homologous
HL_7A0S_059
HL_32735.2
HL_3JBU_0931/b/2525:2538No text annotation
HL_3JBU_1231/b/2550:2558tRNA anticodon loop
geometric
HL_6NTA_138
NA
HL_3JBU_0941/b/2551:2557No text annotation
homologous
HL_7A0S_061
HL_30068.2
HL_3JBU_0951/b/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_3JBU_0961/b/2652:2668No text annotation
HL_3JBU_1241/b/2697:2710No text annotation
HL_3JBU_0971/b/2698:2709No text annotation
HL_3JBU_0981/b/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_3JBU_0991/b/2795:2801No text annotation
geometric
HL_5J7L_149
HL_09452.1
HL_3JBU_1001/b/2817:2829No text annotation
geometric
HL_8KAH_003
NA
HL_3JBU_1011/b/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.7
HL_3JBU_1021/v/13:22No text annotation
HL_3JBU_1031/v/29:41No text annotation
homologous
HL_4WT8_136
NA
HL_3JBU_1041/v/53:61T-loop with 2 stacked bulged bases
homologous
HL_4WT8_217
HL_28252.8

Problematic loops

#loop idProblemSequence
HL_3JBU_001No text annotation
HL_3JBU_106No text annotation
HL_3JBU_007No text annotation
HL_3JBU_011No text annotation
HL_3JBU_109No text annotation
HL_3JBU_110No text annotation
HL_3JBU_111No text annotation
HL_3JBU_112No text annotation
HL_3JBU_029No text annotation
HL_3JBU_030No text annotation
HL_3JBU_114No text annotation
HL_3JBU_117No text annotation
HL_3JBU_118GNRA with near cWW
HL_3JBU_120No text annotation
HL_3JBU_121No text annotation
HL_3JBU_069No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3JBU_0011/A/30:33,
1/A/551:553
Isolated non-canonical cWW contact
geometric
IL_5UNE_009
IL_44465.1
IL_3JBU_0021/A/44:46,
1/A/395:398
Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_3JBU_0031/A/47:52,
1/A/359:361
No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_3JBU_0041/A/54:56,
1/A/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_3JBU_0051/A/63:66,
1/A/103:104
Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_3JBU_0061/A/67:69,
1/A/99:102
Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_3JBU_1551/A/70:73,
1/A/97:98
Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_3JBU_0081/A/75:79,
1/A/90:95
No text annotation
IL_3JBU_0091/A/127:131,
1/A/231:234
No text annotation
geometric
IL_1GID_008
NA
IL_3JBU_2051/A/128:137,
1/A/226:233
No text annotation
IL_3JBU_0101/A/131:137,
1/A/226:231
No text annotation
IL_3JBU_0111/A/203:206,
1/A/213:214
Minor groove platform
geometric
IL_3RW6_001
IL_15052.4
IL_3JBU_0121/A/242:248,
1/A/276:284
No text annotation
IL_3JBU_0131/A/249:253,
1/A/273:275
No text annotation
homologous
IL_6CZR_124
NA
IL_3JBU_0141/A/292:293,
1/A/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_3JBU_2061/A/409:416,
1/A/427:433
No text annotation
homologous
IL_6CZR_359
NA
IL_3JBU_0151/A/440:442,
1/A/492:497
No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_3JBU_0161/A/443:445,
1/A/490:491
Single stack bend
geometric
IL_5TBW_375
NA
IL_3JBU_2071/A/445:458,
1/A/474:490
No text annotation
IL_3JBU_0171/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_3JBU_0181/A/515:521,
1/A/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_3JBU_0191/A/580:584,
1/A/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_3JBU_1611/A/594:596,
1/A/644:645
Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_3JBU_2081/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_3JBU_0221/A/605:612,
1/A/628:633
No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_3JBU_0231/A/654:655,
1/A/751:754
Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_50694.7
IL_3JBU_2091/A/659:660,
1/A/745:747
Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_3JBU_0251/A/662:666,
1/A/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_3JBU_2101/A/672:673,
1/A/717:734
No text annotation
IL_3JBU_2111/A/673:677,
1/A/713:717
Triple non-canonical cWW pairs
homologous
IL_6CZR_409
NA
IL_3JBU_0261/A/684:688,
1/A/699:706
Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_3JBU_0271/A/774:778,
1/A/804:805
Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_3JBU_0281/A/779:783,
1/A/799:803
tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_3JBU_1681/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_3JBU_0301/A/922:923,
1/A/1393:1395
Single bulged A
homologous
IL_5J7L_039
IL_31462.6
IL_3JBU_0311/A/925:927,
1/A/1390:1391
Single bulged G
homologous
IL_5J7L_040
IL_00225.13
IL_3JBU_0321/A/933:935,
1/A/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_3JBU_0331/A/953:954,
1/A/1226:1228
Minor groove platform
homologous
IL_4LFB_038
IL_51454.3
IL_3JBU_0341/A/993:999,
1/A/1041:1045
No text annotation
IL_3JBU_1701/A/1047:1055,
1/A/1205:1210
No text annotation
IL_3JBU_2121/A/1057:1058,
1/A/1199:1203
Minor groove platform
homologous
IL_4LFB_045
IL_95583.2
IL_3JBU_0371/A/1060:1063,
1/A/1193:1197
Tandem non-canonical cWW pairs
geometric
IL_1L9A_005
IL_85033.2
IL_3JBU_0381/A/1124:1129,
1/A/1143:1149
No text annotation
IL_3JBU_1711/A/1124:1132,
1/A/1142:1149
No text annotation
IL_3JBU_0391/A/1129:1132,
1/A/1142:1143
Minor groove platform
geometric
IL_5J7L_052
IL_15052.4
IL_3JBU_2131/A/1247:1258,
1/A/1277:1290
No text annotation
IL_3JBU_0401/A/1254:1258,
1/A/1277:1283
No text annotation
IL_3JBU_2141/A/1259:1263,
1/A/1272:1276
Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_3JBU_0421/A/1303:1308,
1/A/1329:1334
No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_3JBU_0431/A/1401:1405,
1/A/1496:1501
No text annotation
homologous
IL_4LFB_057
NA
IL_3JBU_0441/A/1405:1407,
1/A/1494:1496
Isolated non-canonical cWW pair
geometric
IL_4V9F_017
IL_87907.2
IL_3JBU_1741/A/1405:1409,
1/A/1491:1496
Partly complementary
homologous
IL_6CZR_167
NA
IL_3JBU_0451/A/1407:1409,
1/A/1491:1494
Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_3JBU_0461/A/1412:1414,
1/A/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_3JBU_0471/A/1416:1419,
1/A/1481:1484
Double sheared
homologous
IL_6CZR_169
NA
IL_3JBU_0481/A/1430:1435,
1/A/1466:1470
Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_3JBU_2151/A/1440:1442,
1/A/1460:1461
Single bulged A
homologous
IL_5J7L_064
IL_31462.6
IL_3JBU_0501/A/1445:1448,
1/A/1455:1457
No text annotation
homologous
IL_5J7L_065
IL_31531.3
IL_3JBU_0511/a/17:18,
1/a/65:67
Major groove intercalation
homologous
IL_5J7L_355
IL_31462.6
IL_3JBU_0521/a/23:28,
1/a/56:60
No text annotation
homologous
IL_7A0S_103
IL_18472.4
IL_3JBU_0531/a/30:31,
1/a/51:54
Major groove minor groove platform; mini C-loop
geometric
IL_6CZR_137
NA
IL_3JBU_2161/a/33:38,
1/a/44:49
No text annotation
IL_3JBU_0551/a/71:79,
1/a/97:105
Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_3JBU_0561/b/24:30,
1/b/510:516
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_3JBU_0571/b/36:37,
1/b/442:444
Single bulged A
homologous
IL_7A0S_002
IL_31462.6
IL_3JBU_1761/b/38:44,
1/b/434:441
No text annotation
IL_3JBU_0581/b/42:44,
1/b/434:437
No text annotation
IL_3JBU_0591/b/81:85,
1/b/97:105
No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_3JBU_0601/b/86:87,
1/b/94:96
Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_3JBU_0611/b/183:184,
1/b/212:214
Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_3JBU_0621/b/188:194,
1/b/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_3JBU_0631/b/239:245,
1/b/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_3JBU_0641/b/269:271,
1/b/366:370
No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_3JBU_0651/b/274:281,
1/b/359:363
No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_3JBU_0661/b/293:296,
1/b/342:347
No text annotation
IL_3JBU_0671/b/481:484,
1/b/496:509
No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_3JBU_0681/b/536:539,
1/b/554:557
Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_3JBU_0691/b/564:566,
1/b/575:577
Isolated non-canonical cWW pair
geometric
IL_7A0S_011
IL_07785.1
IL_3JBU_0701/b/606:610,
1/b/618:622
AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_3JBU_0711/b/672:678,
1/b/799:808
No text annotation
IL_3JBU_0721/b/697:698,
1/b/763:765
Single bulged A
geometric
IL_4WF9_022
IL_31462.6
IL_3JBU_0731/b/702:707,
1/b/724:730
No text annotation
geometric
IL_4V88_462
NA
IL_3JBU_0741/b/738:740,
1/b/757:758
Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_3JBU_0751/b/775:777,
1/b/787:791
Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_3JBU_1771/b/841:845,
1/b/932:937
No text annotation
IL_3JBU_2171/b/841:853,
1/b/924:937
No text annotation
IL_3JBU_0761/b/842:845,
1/b/932:936
No text annotation
IL_3JBU_0771/b/845:851,
1/b/926:932
No text annotation
IL_3JBU_2181/b/845:853,
1/b/924:932
No text annotation
IL_3JBU_0781/b/856:862,
1/b/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_3JBU_0791/b/862:863,
1/b/913:915
Single bulged G
geometric
IL_5J7L_271
IL_00225.13
IL_3JBU_0801/b/864:868,
1/b/909:912
C-loop with bulged stacked A's
homologous
IL_7A0S_029
IL_26222.2
IL_3JBU_0811/b/870:872,
1/b/905:907
Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_3JBU_0821/b/875:879,
1/b/898:902
No text annotation
IL_3JBU_0831/b/879:881,
1/b/895:898
No text annotation
IL_3JBU_0841/b/994:996,
1/b/1159:1160
No text annotation
IL_3JBU_1801/b/994:1002,
1/b/1153:1160
No text annotation
IL_3JBU_0851/b/998:1002,
1/b/1153:1157
No text annotation
IL_3JBU_1811/b/1002:1014,
1/b/1148:1153
No text annotation
IL_3JBU_0861/b/1004:1013,
1/b/1149:1151
No text annotation
IL_3JBU_0871/b/1017:1024,
1/b/1140:1145
No text annotation
IL_3JBU_0881/b/1024:1030,
1/b/1124:1140
No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_3JBU_0891/b/1031:1036,
1/b/1119:1123
Partly complementary
geometric
IL_6CZR_167
NA
IL_3JBU_0901/b/1038:1041,
1/b/1114:1117
Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_3JBU_0911/b/1043:1053,
1/b/1106:1112
No text annotation
IL_3JBU_0921/b/1059:1062,
1/b/1076:1079
No text annotation
IL_3JBU_0931/b/1087:1090,
1/b/1101:1102
No text annotation
IL_3JBU_0941/b/1196:1199,
1/b/1246:1250
No text annotation
IL_3JBU_2191/b/1196:1207,
1/b/1239:1250
No text annotation
IL_3JBU_0951/b/1199:1207,
1/b/1239:1246
No text annotation
IL_3JBU_0961/b/1208:1215,
1/b/1234:1238
Kink-turn
geometric
IL_4V9F_048
IL_70923.9
IL_3JBU_0971/b/1262:1269,
1/b/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_3JBU_0981/b/1310:1313,
1/b/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_3JBU_0991/b/1319:1323,
1/b/1331:1333
C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_3JBU_1851/b/1351:1361,
1/b/1370:1380
No text annotation
IL_3JBU_2201/b/1406:1417,
1/b/1581:1596
No text annotation
IL_3JBU_1001/b/1412:1417,
1/b/1581:1590
No text annotation
IL_3JBU_1011/b/1417:1421,
1/b/1577:1581
UAA/GAN
geometric
IL_5J7L_295
IL_38507.2
IL_3JBU_2211/b/1424:1429,
1/b/1564:1574
No text annotation
IL_3JBU_1021/b/1432:1435,
1/b/1557:1561
No text annotation
IL_3JBU_1031/b/1437:1440,
1/b/1551:1555
tSH-tHW
homologous
IL_7A0S_053
IL_99646.2
IL_3JBU_1041/b/1468:1472,
1/b/1519:1524
No text annotation
IL_3JBU_1891/b/1468:1479,
1/b/1512:1524
No text annotation
IL_3JBU_1051/b/1472:1479,
1/b/1512:1519
No text annotation
IL_3JBU_1061/b/1481:1482,
1/b/1507:1510
No text annotation
IL_3JBU_1071/b/1484:1491,
1/b/1499:1505
No text annotation
IL_3JBU_1081/b/1651:1656,
1/b/2004:2006
No text annotation
geometric
IL_5J7L_304
IL_12566.4
IL_3JBU_1091/b/1660:1665,
1/b/1995:2000
No text annotation
IL_3JBU_1101/b/1666:1669,
1/b/1993:1994
Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_3JBU_1911/b/1666:1674,
1/b/1990:1994
No text annotation
homologous
IL_5J7L_386
IL_22854.4
IL_3JBU_1111/b/1669:1674,
1/b/1990:1993
Intercalated tWH
homologous
IL_5J7L_307
IL_76758.2
IL_3JBU_1121/b/1686:1691,
1/b/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7A0S_063
IL_47346.2
IL_3JBU_1131/b/1712:1718,
1/b/1742:1746
6x5 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_309
IL_88269.4
IL_3JBU_1141/b/1720:1724,
1/b/1736:1740
Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_3JBU_1151/b/1727:1728,
1/b/1731:1733
Single bulged C
homologous
IL_5J7L_311
IL_61258.15
IL_3JBU_1161/b/1769:1772,
1/b/1979:1983
No text annotation
IL_3JBU_1171/b/1798:1804,
1/b/1813:1821
Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_3JBU_1181/b/1837:1841,
1/b/1901:1903
No text annotation
IL_3JBU_1931/b/1837:1842,
1/b/1898:1903
No text annotation
IL_3JBU_1191/b/1841:1842,
1/b/1898:1901
No text annotation
IL_3JBU_1941/b/1846:1860,
1/b/1882:1894
No text annotation
IL_3JBU_1201/b/1864:1867,
1/b/1874:1878
UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_3JBU_1211/b/1933:1934,
1/b/1964:1967
Bulged stacked bases
homologous
IL_5J7L_318
IL_22551.4
IL_3JBU_1221/b/1934:1947,
1/b/1959:1964
No text annotation
IL_3JBU_1231/b/2050:2052,
1/b/2617:2618
No text annotation
IL_3JBU_1951/b/2050:2056,
1/b/2612:2618
No text annotation
IL_3JBU_1241/b/2053:2056,
1/b/2612:2616
No text annotation
IL_3JBU_1251/b/2067:2069,
1/b/2442:2443
Single bulged U
homologous
IL_7RQB_080
NA
IL_3JBU_2221/b/2070:2071,
1/b/2438:2441
Minor groove platform
homologous
IL_5J7L_324
IL_51454.3
IL_3JBU_1271/b/2081:2083,
1/b/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7A0S_077
IL_85599.2
IL_3JBU_1281/b/2085:2087,
1/b/2232:2234
Isolated non-canonical cWW pair
geometric
IL_5J7L_326
IL_28037.2
IL_3JBU_1291/b/2103:2105,
1/b/2184:2186
Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_3JBU_1961/b/2103:2121,
1/b/2177:2186
No text annotation
IL_3JBU_1301/b/2105:2121,
1/b/2177:2184
No text annotation
IL_3JBU_1311/b/2202:2204,
1/b/2220:2221
Single bulged U
geometric
IL_5J7L_331
IL_89505.4
IL_3JBU_1981/b/2283:2297,
1/b/2321:2325
No text annotation
IL_3JBU_2231/b/2283:2300,
1/b/2316:2325
No text annotation
IL_3JBU_1321/b/2297:2299,
1/b/2317:2321
No text annotation
IL_3JBU_2241/b/2297:2300,
1/b/2316:2321
No text annotation
IL_3JBU_1331/b/2326:2328,
1/b/2387:2389
No text annotation
IL_3JBU_1341/b/2350:2353,
1/b/2364:2367
Double sheared
homologous
IL_7RQB_089
NA
IL_3JBU_1351/b/2401:2403,
1/b/2414:2415
No text annotation
IL_3JBU_1361/b/2454:2455,
1/b/2496:2498
Major groove platform
homologous
IL_7RQB_092
NA
IL_3JBU_1371/b/2457:2459,
1/b/2493:2494
Major groove platform
geometric
IL_5TBW_104
NA
IL_3JBU_2011/b/2457:2461,
1/b/2489:2494
No text annotation
IL_3JBU_1381/b/2459:2461,
1/b/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
IL_51387.2
IL_3JBU_1391/b/2466:2470,
1/b/2480:2484
Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_3JBU_1401/b/2507:2509,
1/b/2579:2582
Major groove platform with extra pair
geometric
IL_7RQB_093
NA
IL_3JBU_1411/b/2509:2512,
1/b/2574:2579
No text annotation
geometric
IL_3MEI_004
IL_51479.1
IL_3JBU_1421/b/2512:2513,
1/b/2571:2574
No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_3JBU_1431/b/2520:2523,
1/b/2540:2545
No text annotation
IL_3JBU_2251/b/2589:2594,
1/b/2599:2605
No text annotation
geometric
IL_8SSW_003
IL_82292.1
IL_3JBU_1451/b/2636:2640,
1/b/2774:2782
tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_3JBU_1461/b/2680:2684,
1/b/2725:2727
C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_3JBU_1471/b/2687:2691,
1/b/2718:2722
No text annotation
homologous
IL_4WF9_102
IL_23774.1
IL_3JBU_1481/b/2694:2696,
1/b/2711:2715
Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_3JBU_1491/b/2737:2742,
1/b/2762:2767
UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_3JBU_1501/b/2806:2811,
1/b/2889:2892
No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_3JBU_1511/b/2838:2841,
1/b/2876:2880
No text annotation
IL_3JBU_1521/b/2843:2846,
1/b/2870:2874
Multiple bulged bases with non-canonical cWW
geometric
IL_5J7L_353
IL_64231.5
IL_3JBU_2041/b/2847:2852,
1/b/2865:2869
tHS double platform
homologous
IL_5J7L_354
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_3JBU_154Tandem non-canonical cWW pairs
IL_3JBU_007No text annotation
IL_3JBU_156No text annotation
IL_3JBU_157No text annotation
IL_3JBU_158No text annotation
IL_3JBU_159No text annotation
IL_3JBU_160No text annotation
IL_3JBU_020No text annotation
IL_3JBU_0218-nt loop receptor
IL_3JBU_162No text annotation
IL_3JBU_163No text annotation
IL_3JBU_024No text annotation
IL_3JBU_164Partly complementary
IL_3JBU_165No text annotation
IL_3JBU_166No text annotation
IL_3JBU_167tSH-tHW-tHS-cWW
IL_3JBU_0299x7 Sarcin-Ricin with inserted C; G-bulge
IL_3JBU_169No text annotation
IL_3JBU_035No text annotation
IL_3JBU_036Minor groove platform with extra cWW
IL_3JBU_172No text annotation
IL_3JBU_173No text annotation
IL_3JBU_041No text annotation
IL_3JBU_175No text annotation
IL_3JBU_049No text annotation
IL_3JBU_054No text annotation
IL_3JBU_178No text annotation
IL_3JBU_179No text annotation
IL_3JBU_182No text annotation
IL_3JBU_183No text annotation
IL_3JBU_184No text annotation
IL_3JBU_186No text annotation
IL_3JBU_187No text annotation
IL_3JBU_188No text annotation
IL_3JBU_190No text annotation
IL_3JBU_192No text annotation
IL_3JBU_126No text annotation
IL_3JBU_197Partly complementary
IL_3JBU_199No text annotation
IL_3JBU_200No text annotation
IL_3JBU_202No text annotation
IL_3JBU_144No text annotation
IL_3JBU_203No text annotation
IL_3JBU_153No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3JBU_0011/A/46:47,
1/A/361:367,
1/A/393:395
No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_3JBU_0241/A/46:52,
1/A/359:367,
1/A/393:395
No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_3JBU_0021/A/142:144,
1/A/178:198,
1/A/219:221
No text annotation
J3_3JBU_0251/A/142:153,
1/A/168:199,
1/A/218:221
No text annotation
J3_3JBU_0031/A/586:592,
1/A/647:654,
1/A/754:755
No text annotation
J3_3JBU_0481/A/586:592,
1/A/647:655,
1/A/751:755
No text annotation
J3_3JBU_0491/A/826:830,
1/A/856:861,
1/A/868:874
No text annotation
J3_3JBU_0271/A/936:939,
1/A/1344:1350,
1/A/1372:1379
No text annotation
homologous
J3_5J7L_052
J3_25303.4
J3_3JBU_0501/A/939:950,
1/A/1231:1237,
1/A/1337:1344
No text annotation
J3_3JBU_0051/A/940:946,
1/A/1235:1237,
1/A/1337:1343
No text annotation
J3_3JBU_0061/A/955:962,
1/A/973:984,
1/A/1221:1225
No text annotation
geometric
J3_4LFB_004
J3_83516.4
J3_3JBU_0291/A/955:962,
1/A/973:986,
1/A/1219:1225
No text annotation
homologous
J3_6CZR_062
NA
J3_3JBU_0071/A/990:993,
1/A/1045:1047,
1/A/1210:1215
No text annotation
homologous
J3_6CZR_021
NA
J3_3JBU_0301/A/990:999,
1/A/1041:1047,
1/A/1210:1215
No text annotation
J3_3JBU_0081/A/1002:1006,
1/A/1023:1028,
1/A/1033:1038
No text annotation
J3_3JBU_0311/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193
No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_3JBU_0511/A/1068:1074,
1/A/1083:1088,
1/A/1097:1107
No text annotation
J3_3JBU_0101/A/1071:1074,
1/A/1083:1089,
1/A/1096:1104
No text annotation
J3_3JBU_0111/A/1116:1118,
1/A/1155:1161,
1/A/1175:1184
No text annotation
homologous
J3_5J7L_054
J3_17791.2
J3_3JBU_0121/A/1237:1241,
1/A/1296:1303,
1/A/1334:1337
No text annotation
homologous
J3_5J7L_011
J3_37047.6
J3_3JBU_0331/a/7:16,
1/a/68:70,
1/a/106:113
No text annotation
J3_3JBU_0131/a/8:16,
1/a/68:70,
1/a/106:112
No text annotation
J3_3JBU_0341/b/24:31,
1/b/474:481,
1/b/509:516
No text annotation
J3_3JBU_0141/b/30:31,
1/b/474:481,
1/b/509:510
No text annotation
homologous
J3_5J7L_036
J3_60031.2
J3_3JBU_0351/b/32:35,
1/b/445:461,
1/b/468:473
No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_3JBU_0151/b/56:57,
1/b/70:77,
1/b/109:114
No text annotation
J3_3JBU_0361/b/56:57,
1/b/70:78,
1/b/108:114
No text annotation
J3_3JBU_0371/b/683:689,
1/b/773:775,
1/b/791:794
No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_3JBU_0381/b/694:700,
1/b/732:736,
1/b/760:768
No text annotation
J3_3JBU_0171/b/698:700,
1/b/732:736,
1/b/760:763
No text annotation
homologous
J3_5J7L_039
J3_44724.7
J3_3JBU_0391/b/1043:1059,
1/b/1079:1087,
1/b/1102:1112
No text annotation
J3_3JBU_0401/b/1053:1059,
1/b/1079:1087,
1/b/1102:1106
No text annotation
J3_3JBU_0181/b/1298:1304,
1/b/1624:1627,
1/b/1639:1642
No text annotation
J3_3JBU_0411/b/1298:1305,
1/b/1623:1627,
1/b/1639:1642
No text annotation
J3_3JBU_0191/b/1306:1309,
1/b/1605:1611,
1/b/1620:1622
No text annotation
geometric
J3_7A0S_007
J3_71677.1
J3_3JBU_0521/b/1344:1350,
1/b/1381:1385,
1/b/1402:1403
No text annotation
J3_3JBU_0441/b/2085:2093,
1/b/2196:2200,
1/b/2223:2234
No text annotation
J3_3JBU_0201/b/2088:2093,
1/b/2196:2200,
1/b/2223:2231
No text annotation
J3_3JBU_0531/b/2329:2347,
1/b/2370:2373,
1/b/2380:2386
No text annotation
J3_3JBU_0211/b/2517:2520,
1/b/2545:2547,
1/b/2561:2567
No text annotation
J3_3JBU_0461/b/2517:2523,
1/b/2540:2547,
1/b/2561:2567
No text annotation
J3_3JBU_0221/b/2789:2791,
1/b/2805:2806,
1/b/2892:2894
No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_3JBU_0231/b/2812:2815,
1/b/2831:2836,
1/b/2882:2888
No text annotation
geometric
J3_5J7L_048
J3_64069.1
J4_3JBU_0111/A/115:122,
1/A/239:240,
1/A/286:289,
1/A/311:312
No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_3JBU_0121/A/142:153,
1/A/168:185,
1/A/192:198,
1/A/219:221
No text annotation
J4_3JBU_0021/b/268:269,
1/b/370:375,
1/b/399:406,
1/b/421:424
No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_3JBU_0031/b/293:301,
1/b/316:319,
1/b/323:325,
1/b/337:347
No text annotation
J4_3JBU_0131/b/598:604,
1/b/624:628,
1/b/635:638,
1/b/650:659
No text annotation
J4_3JBU_0141/b/1270:1276,
1/b/1294:1295,
1/b/1645:1648,
1/b/2009:2010
No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_3JBU_0151/b/1313:1316,
1/b/1336:1343,
1/b/1404:1405,
1/b/1597:1603
No text annotation
J4_3JBU_0071/b/1444:1445,
1/b/1466:1467,
1/b/1525:1526,
1/b/1546:1547
No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_3JBU_0081/b/2282:2283,
1/b/2325:2326,
1/b/2389:2395,
1/b/2421:2427
No text annotation
J4_3JBU_0161/b/2643:2646,
1/b/2674:2676,
1/b/2731:2742,
1/b/2762:2771
No text annotation
J4_3JBU_0171/v/7:10,
1/v/25:27,
1/v/43:51,
1/v/63:66
No text annotation
homologous
J4_7U2I_014
J4_47701.1
J5_3JBU_0011/A/36:39,
1/A/403:406,
1/A/436:442,
1/A/492:500,
1/A/545:548
No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_3JBU_0091/A/54:61,
1/A/106:113,
1/A/314:316,
1/A/337:339,
1/A/350:357
No text annotation
J5_3JBU_0031/b/47:54,
1/b/116:121,
1/b/130:131,
1/b/148:150,
1/b/176:178
No text annotation
homologous
J5_4WF9_001
J5_01737.2
J5_3JBU_0041/b/531:533,
1/b/560:564,
1/b/577:579,
1/b/1261:1262,
1/b/2017:2018
No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_3JBU_0101/b/582:590,
1/b/667:671,
1/b/809:812,
1/b/1195:1196,
1/b/1250:1258
No text annotation
J5_3JBU_0111/b/1674:1683,
1/b/1705:1707,
1/b/1751:1752,
1/b/1756:1764,
1/b/1988:1990
No text annotation
J5_3JBU_0121/b/2057:2067,
1/b/2443:2454,
1/b/2498:2508,
1/b/2580:2588,
1/b/2606:2611
No text annotation
J5_3JBU_0081/b/2074:2077,
1/b/2243:2246,
1/b/2258:2259,
1/b/2281:2282,
1/b/2427:2435
No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_3JBU_0011/b/45:46,
1/b/179:184,
1/b/212:224,
1/b/231:235,
1/b/262:266,
1/b/426:433
No text annotation
J6_3JBU_0031/b/1769:1776,
1/b/1788:1796,
1/b/1823:1835,
1/b/1905:1906,
1/b/1924:1933,
1/b/1967:1983
No text annotation
J7_3JBU_0011/b/8:23,
1/b/517:531,
1/b/2018:2024,
1/b/2039:2043,
1/b/2625:2630,
1/b/2788:2789,
1/b/2894:2895
No text annotation
J7_3JBU_0041/b/817:823,
1/b/834:838,
1/b/940:946,
1/b/971:977,
1/b/986:991,
1/b/1163:1164,
1/b/1185:1190
No text annotation
J7_3JBU_0031/b/2074:2077,
1/b/2243:2246,
1/b/2258:2259,
1/b/2281:2283,
1/b/2325:2326,
1/b/2389:2395,
1/b/2421:2435
No text annotation

Problematic loops

#loop idProblemSequence
J3_3JBU_026No text annotation
J3_3JBU_004No text annotation
J3_3JBU_028No text annotation
J3_3JBU_009No text annotation
J3_3JBU_032No text annotation
J3_3JBU_016No text annotation
J3_3JBU_042No text annotation
J3_3JBU_043No text annotation
J3_3JBU_045No text annotation
J3_3JBU_047No text annotation
J4_3JBU_001No text annotation
J4_3JBU_004No text annotation
J4_3JBU_005No text annotation
J4_3JBU_006No text annotation
J4_3JBU_009No text annotation
J4_3JBU_010No text annotation
J5_3JBU_002No text annotation
J5_3JBU_005No text annotation
J5_3JBU_006No text annotation
J5_3JBU_007No text annotation
J6_3JBU_002No text annotation
J7_3JBU_002No text annotation

Coloring options:
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