HL_3JBU_031

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_031 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.3233

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JBU|1|A|G|1515
3JBU|1|A|G|1516
3JBU|1|A|G|1517
3JBU|1|A|A|1518
3JBU|1|A|A|1519
3JBU|1|A|C|1520

Current chains

Chain A

16S rRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA