HL_3JBU_046

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGGACCAUCC

Length

10 nucleotides

Bulged bases

3JBU|1|b|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_046 not in the Motif Atlas

Geometric match to HL_4V9F_061

Geometric discrepancy: 0.3587

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

3JBU|1|b|G|409
3JBU|1|b|G|410
3JBU|1|b|G|411
3JBU|1|b|A|412
3JBU|1|b|C|413
3JBU|1|b|C|414
3JBU|1|b|A|415
3JBU|1|b|U|416
3JBU|1|b|C|417
3JBU|1|b|C|418

Current chains

Chain b

23S rRNA

Nearby chains