HL_3JBU_060

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_060 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2681

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JBU|1|b|G|978
3JBU|1|b|A|979
3JBU|1|b|A|980
3JBU|1|b|A|981
3JBU|1|b|C|982
3JBU|1|b|A|983
3JBU|1|b|A|984
3JBU|1|b|C|985

Current chains

Chain b

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L30

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21