HL_3JBU_073

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

3JBU|1|b|A|1614, 3JBU|1|b|A|1616, 3JBU|1|b|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_073 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.2068

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

3JBU|1|b|C|1612
3JBU|1|b|G|1613
3JBU|1|b|A|1614
3JBU|1|b|C|1615
3JBU|1|b|A|1616
3JBU|1|b|C|1617
3JBU|1|b|A|1618
3JBU|1|b|G|1619

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain s

50S ribosomal protein L22

Chain z

SecM-glycine