HL_3JBU_080

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_080 not in the Motif Atlas

Geometric match to HL_4V88_207

Geometric discrepancy: 0.3304

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JBU|1|b|C|1868
3JBU|1|b|G|1869
3JBU|1|b|C|1870
3JBU|1|b|A|1871
3JBU|1|b|A|1872
3JBU|1|b|G|1873

Current chains

Chain b

23S rRNA

Nearby chains